• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

在泵浦-探测实验中推断随机取向的非晶态生物分子中的快速电子密度变化。

Deducing fast electron density changes in randomly orientated uncrystallized biomolecules in a pump-probe experiment.

作者信息

Pande K, Schwander P, Schmidt M, Saldin D K

机构信息

Department of Physics, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA.

Department of Physics, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA

出版信息

Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130332. doi: 10.1098/rstb.2013.0332.

DOI:10.1098/rstb.2013.0332
PMID:24914159
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4052868/
Abstract

We propose a method for deducing time-resolved structural changes in uncrystallized biomolecules in solution. The method relies on measuring the angular correlations of the intensities, when averaged over a large number of diffraction patterns from randomly oriented biomolecules in solution in a liquid solvent. The experiment is somewhat like a pump-probe version of an experiment on small angle X-ray scattering, except that the data expected by the algorithm are not just the radial variation of the averaged intensities. The differences of these correlation functions as measured from a photoexcited and dark structure enable the direct calculation of the difference electron density with a knowledge of only the dark structure. We exploit a linear relation we derive between the difference in these correlation functions and the difference electron density, applicable for small structural changes.

摘要

我们提出了一种推断溶液中未结晶生物分子时间分辨结构变化的方法。该方法依赖于测量强度的角相关性,这是在对液体溶剂中溶液里随机取向的生物分子的大量衍射图样进行平均时得到的。该实验有点类似于小角X射线散射实验的泵浦-探测版本,只是算法预期的数据不仅仅是平均强度的径向变化。通过光激发结构和暗结构测量得到的这些相关函数的差异,仅需了解暗结构就能直接计算差分电子密度。我们利用了我们推导得出的这些相关函数的差异与差分电子密度之间的线性关系,该关系适用于小的结构变化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dce2/4052868/00db55aa9b87/rstb20130332-g5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dce2/4052868/64a5bb800de0/rstb20130332-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dce2/4052868/6a611d5cf88c/rstb20130332-g2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dce2/4052868/476b579453d2/rstb20130332-g3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dce2/4052868/2d88ccc453ff/rstb20130332-g4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dce2/4052868/00db55aa9b87/rstb20130332-g5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dce2/4052868/64a5bb800de0/rstb20130332-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dce2/4052868/6a611d5cf88c/rstb20130332-g2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dce2/4052868/476b579453d2/rstb20130332-g3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dce2/4052868/2d88ccc453ff/rstb20130332-g4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dce2/4052868/00db55aa9b87/rstb20130332-g5.jpg

相似文献

1
Deducing fast electron density changes in randomly orientated uncrystallized biomolecules in a pump-probe experiment.在泵浦-探测实验中推断随机取向的非晶态生物分子中的快速电子密度变化。
Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130332. doi: 10.1098/rstb.2013.0332.
2
A minimal view of single-particle imaging with X-ray lasers.关于用X射线激光进行单粒子成像的极简观点。
Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130328. doi: 10.1098/rstb.2013.0328.
3
Simulations on time-resolved structure determination of uncrystallized biomolecules in the presence of shot noise.在散粒噪声存在下对未结晶生物分子的时间分辨结构测定的模拟。
Struct Dyn. 2015 Apr 10;2(2):024103. doi: 10.1063/1.4916980. eCollection 2015 Mar.
4
The correlation of single-particle diffraction patterns as a continuous function of particle orientation.单粒子衍射图案作为粒子取向连续函数的相关性。
Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130329. doi: 10.1098/rstb.2013.0329.
5
Three-dimensional structure determination protocol for noncrystalline biomolecules using x-ray free-electron laser diffraction imaging.使用X射线自由电子激光衍射成像确定非晶态生物分子三维结构的方法
Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Feb;87(2):022712. doi: 10.1103/PhysRevE.87.022712. Epub 2013 Feb 19.
6
Efficient calculation of diffracted intensities in the case of nonstationary scattering by biological macromolecules under XFEL pulses.在X射线自由电子激光脉冲下生物大分子非平稳散射情况下衍射强度的高效计算。
Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):293-303. doi: 10.1107/S1399004714025450. Epub 2015 Jan 23.
7
Observation of correlated X-ray scattering at atomic resolution.原子分辨率下相关X射线散射的观测
Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130315. doi: 10.1098/rstb.2013.0315.
8
Computation of fluctuation scattering profiles via three-dimensional Zernike polynomials.通过三维泽尼克多项式计算涨落散射轮廓
Acta Crystallogr A. 2012 Sep;68(Pt 5):561-7. doi: 10.1107/S0108767312029637. Epub 2012 Aug 15.
9
Classification of projection images of proteins with structural polymorphism by manifold: a simulation study for x-ray free-electron laser diffraction imaging.基于流形的具有结构多态性的蛋白质投影图像分类:X射线自由电子激光衍射成像的模拟研究
Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Sep;92(3):032710. doi: 10.1103/PhysRevE.92.032710. Epub 2015 Sep 14.
10
Opportunities and challenges for time-resolved studies of protein structural dynamics at X-ray free-electron lasers.在X射线自由电子激光下进行蛋白质结构动力学时间分辨研究的机遇与挑战。
Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130318. doi: 10.1098/rstb.2013.0318.

引用本文的文献

1
Method of moments for 3D single particle modeling with non-uniform distribution of viewing angles.用于三维单粒子建模且视角分布不均匀的矩量法。
Inverse Probl. 2020 Apr;36(4). doi: 10.1088/1361-6420/ab6139. Epub 2020 Feb 26.
2
Preferred orientation and its effects on intensity-correlation measurements.择优取向及其对强度关联测量的影响。
IUCrJ. 2022 Jan 21;9(Pt 2):231-242. doi: 10.1107/S2052252521012422. eCollection 2022 Mar 1.
3
Steerable ePCA: Rotationally Invariant Exponential Family PCA.可控主成分分析:旋转不变指数族主成分分析

本文引用的文献

1
Fiber diffraction without fibers.无纤维的纤维衍射。
Phys Rev Lett. 2013 Jun 28;110(26):265505. doi: 10.1103/PhysRevLett.110.265505. Epub 2013 Jun 27.
2
Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography.皮秒 X 射线晶体学直观呈现光激活黄色蛋白中的体积守恒顺反异构途径。
Nat Chem. 2013 Mar;5(3):212-20. doi: 10.1038/nchem.1565. Epub 2013 Feb 3.
3
Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography.通过 100 皮秒时间分辨劳埃晶体学实时观察信号蛋白的功能。
IEEE Trans Image Process. 2020 Apr 27. doi: 10.1109/TIP.2020.2988139.
4
Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses.散射X射线激光脉冲中的相关性揭示了病毒的纳米级结构特征。
Phys Rev Lett. 2017 Oct 13;119(15):158102. doi: 10.1103/PhysRevLett.119.158102. Epub 2017 Oct 12.
5
XFELs for structure and dynamics in biology.用于生物学结构与动力学研究的X射线自由电子激光
IUCrJ. 2017 May 10;4(Pt 4):322-339. doi: 10.1107/S2052252517005760. eCollection 2017 Jul 1.
6
Angular correlations of photons from solution diffraction at a free-electron laser encode molecular structure.来自自由电子激光溶液衍射的光子角关联编码分子结构。
IUCrJ. 2016 Sep 26;3(Pt 6):420-429. doi: 10.1107/S2052252516013956. eCollection 2016 Nov 1.
7
Simulations on time-resolved structure determination of uncrystallized biomolecules in the presence of shot noise.在散粒噪声存在下对未结晶生物分子的时间分辨结构测定的模拟。
Struct Dyn. 2015 Apr 10;2(2):024103. doi: 10.1063/1.4916980. eCollection 2015 Mar.
8
Enzyme transient state kinetics in crystal and solution from the perspective of a time-resolved crystallographer.从时间分辨晶体学家的角度看晶体和溶液中的酶瞬变态动力学。
Struct Dyn. 2014 Mar 27;1(2):024701. doi: 10.1063/1.4869472. eCollection 2014 Mar.
9
Operational properties of fluctuation X-ray scattering data.涨落 X 射线散射数据的运算性质。
IUCrJ. 2015 Mar 20;2(Pt 3):309-16. doi: 10.1107/S2052252515002535. eCollection 2015 May 1.
10
The birth of a new field.一个新领域的诞生。
Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130309. doi: 10.1098/rstb.2013.0309.
Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19256-61. doi: 10.1073/pnas.1210938109. Epub 2012 Nov 6.
4
Time-resolved structural studies at synchrotrons and X-ray free electron lasers: opportunities and challenges.同步辐射和自由电子激光的时间分辨结构研究:机遇与挑战。
Curr Opin Struct Biol. 2012 Oct;22(5):651-9. doi: 10.1016/j.sbi.2012.08.006. Epub 2012 Sep 25.
5
High-resolution protein structure determination by serial femtosecond crystallography.利用连续飞秒晶体学技术测定高分辨率蛋白质结构。
Science. 2012 Jul 20;337(6092):362-4. doi: 10.1126/science.1217737. Epub 2012 May 31.
6
Injector for scattering measurements on fully solvated biospecies.用于对完全溶剂化生物物种进行散射测量的注射器。
Rev Sci Instrum. 2012 Mar;83(3):035108. doi: 10.1063/1.3693040.
7
Time-resolved protein nanocrystallography using an X-ray free-electron laser.利用X射线自由电子激光的时间分辨蛋白质纳米晶体学。
Opt Express. 2012 Jan 30;20(3):2706-16. doi: 10.1364/OE.20.002706.
8
Reconstructing an icosahedral virus from single-particle diffraction experiments.通过单颗粒衍射实验重建二十面体病毒。
Opt Express. 2011 Aug 29;19(18):17318-35. doi: 10.1364/OE.19.017318.
9
Signal, noise, and resolution in correlated fluctuations from snapshot small-angle x-ray scattering.来自快照小角X射线散射的关联涨落中的信号、噪声和分辨率
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jul;84(1 Pt 1):011921. doi: 10.1103/PhysRevE.84.011921. Epub 2011 Jul 25.
10
Structure of isolated biomolecules obtained from ultrashort x-ray pulses: exploiting the symmetry of random orientations.从超短X射线脉冲获得的分离生物分子的结构:利用随机取向的对称性
J Phys Condens Matter. 2009 Apr 1;21(13):134014. doi: 10.1088/0953-8984/21/13/134014. Epub 2009 Mar 12.