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枯叶蛾科(鳞翅目:尺蛾总科:枝尺蛾科)的 Apocheima cinerarius 的完整线粒体基因组及其与其他鳞翅目昆虫的比较。

The complete mitogenome of Apocheima cinerarius (Lepidoptera: Geometridae: Ennominae) and comparison with that of other lepidopteran insects.

机构信息

Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China; University of the Chinese Academy of Sciences, Beijing 100049, China.

Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.

出版信息

Gene. 2014 Aug 15;547(1):136-44. doi: 10.1016/j.gene.2014.06.044. Epub 2014 Jun 24.

Abstract

The complete mitochondrial genome (mitogenome) of a female flightless geometrid moth Apocheima cinerarius was found to be 15,722 bp in length, containing 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes, and a control region. The A+T content of the complete mitogenome is 80.83%. The AT skew value ([A-T]/[A+T]) is 0.027. The 13 PCGs of the mitogenome start with typical ATN codons, except for cox1 with the start codon CGA. All the tRNA genes have typical cloverleaf secondary structures, except for trnSer(AGN). The secondary structures of rrnL and rrnS were predicted. Six structural domains including conserved regions (IV, V) and variable regions (I, II, III, VI) were identified in the secondary structure of rrnL. The secondary structure of rrnS consists of 3 structural domains. The control region of A. cinerarius begins with conserved motifs of "ATAGA"+19-bp poly T. It also contains a microsatellite-like (TA)26, a stem-and-loop structure, and a poly-A stretch. Phylogenetic analysis showed that Geometroidea is more closely related to Bombycoidea than to Noctuoidea. A. cinerarius is more closely related to Biston panterinaria than to Phthonandria atrilineata, which is in accordance with the conventional morphology-based classification.

摘要

雌性无翅尺蛾 Apocheima cinerarius 的完整线粒体基因组(mitogenome)长 15722bp,包含 13 个蛋白编码基因(PCGs)、22 个转移 RNA(tRNA)基因、2 个核糖体 RNA(rRNA)基因和一个控制区。完整线粒体基因组的 A+T 含量为 80.83%。A+T 倾斜值 ([A-T]/[A+T]) 为 0.027。线粒体基因组的 13 个 PCGs 以典型的 ATN 密码子开始,除了 cox1 以起始密码子 CGA 开始。所有的 tRNA 基因都具有典型的三叶草二级结构,除了 trnSer(AGN)。预测了 rrnL 和 rrnS 的二级结构。在 rrnL 的二级结构中鉴定了包括保守区(IV、V)和可变区(I、II、III、VI)在内的 6 个结构域。rrnS 的二级结构由 3 个结构域组成。A. cinerarius 的控制区以保守基序“ATAGA”+19bp 多 T 开始。它还包含微卫星样(TA)26、茎环结构和多 A 延伸。系统发育分析表明,鳞翅目与天蛾目比夜蛾目更密切相关。与 Phthonandria atrilineata 相比,A. cinerarius 与 Biston panterinaria 更为密切相关,这与传统的基于形态的分类一致。

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