School of Life Sciences, Anhui Agricultural University, Hefei, 230036, People's Republic of China.
Sericultural Research Institute, Anhui Academy of Agricultural Sciences, Hefei, 230061, People's Republic of China.
Biochem Genet. 2022 Jun;60(3):914-936. doi: 10.1007/s10528-021-10129-9. Epub 2021 Sep 22.
The complete mitochondrial genome (mitogenome) of Saturnia japonica (Lepidoptera: Saturniidae) was sequenced and annotated. It is a circular molecule of 15, 376 bp, composed of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNA), and an adenine (A) + thymine (T)-rich region. All protein-coding genes (PCGs) are initiated by the ATN codon except for cytochrome c oxidase subunit 1 (cox1) gene that is seemingly initiated by the CGA codon. Except for cox2 and nad4, which were terminated by incomplete stop codon T or TA, the rest were terminated by canonical stop codon TAA. The A + T-rich region is high conservative, including 'ATAGA' motif followed by a 19 bp poly-T stretch, a microsatellite-like element (AT) and also a poly-A element, with a total length of 332 bp. The Asn codon was the most frequently used codon, followed by Ile, Leu2, Lys, Met, Phe, and Tyr, while Cys was the least frequently used codon. Phylogenetic relationships analysis based on the 13 PCGs by using maximum likelihood (ML) and neighbor Joining (NJ) revealed that S. japonica belongs to the Saturniidae family. In this study, the annotation and characteristics of the mitogenome of S. japonica were resolved for the first time, which laid a foundation for species classification and the molecular evolution of Lepidoptera: Saturniidae.
圆斑蝾螈(Lepidoptera: Saturniidae)的完整线粒体基因组(mitogenome)已被测序和注释。它是一个 15376bp 的圆形分子,由 13 个蛋白质编码基因(PCGs)、22 个转移 RNA 基因(tRNAs)、两个核糖体 RNA 基因(rRNA)和一个富含腺嘌呤(A)+胸腺嘧啶(T)的区域组成。除细胞色素 c 氧化酶亚基 1(cox1)基因似乎以 CGA 密码子起始外,所有蛋白质编码基因(PCGs)均以 ATN 密码子起始。除 cox2 和 nad4 外,其余基因均以典型的终止密码子 TAA 终止,cox2 和 nad4 分别以不完全终止密码子 T 或 TA 终止。A+T 丰富区高度保守,包括“ATAGA”基序,其后是 19bp 的聚 T 延伸、微卫星样元件(AT)和多 A 元件,总长度为 332bp。天冬酰胺(Asn)密码子是使用最频繁的密码子,其次是异亮氨酸(Ile)、亮氨酸 2(Leu2)、赖氨酸(Lys)、蛋氨酸(Met)、苯丙氨酸(Phe)和酪氨酸(Tyr),而半胱氨酸(Cys)是使用最不频繁的密码子。基于最大似然法(ML)和邻接法(NJ)对 13 个 PCGs 的系统发育关系分析表明,圆斑蝾螈属于 Saturniidae 科。本研究首次解析了圆斑蝾螈线粒体基因组的注释和特征,为鳞翅目:Saturniidae 的物种分类和分子进化奠定了基础。