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三叶草根瘤菌三叶草生物变种SRDI565的基因组序列。

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565.

作者信息

Reeve Wayne, Drew Elizabeth, Ballard Ross, Melino Vanessa, Tian Rui, De Meyer Sofie, Brau Lambert, Ninawi Mohamed, Teshima Hazuki, Goodwin Lynne, Chain Patrick, Liolios Konstantinos, Pati Amrita, Mavromatis Konstantinos, Ivanova Natalia, Markowitz Victor, Woyke Tanja, Kyrpides Nikos

机构信息

Centre for Rhizobium Studies, Murdoch University, Western Australia, Australia.

South Australian Research and Development Institute, Urrbrae, South Australia, Australia.

出版信息

Stand Genomic Sci. 2013 Dec 15;9(2):220-31. doi: 10.4056/sigs.4468250. eCollection 2013 Dec 20.

DOI:10.4056/sigs.4468250
PMID:24976879
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4062631/
Abstract

Rhizobium leguminosarum bv. trifolii SRDI565 (syn. N8-J) is an aerobic, motile, Gram-negative, non-spore-forming rod. SRDI565 was isolated from a nodule recovered from the roots of the annual clover Trifolium subterraneum subsp. subterraneum grown in the greenhouse and inoculated with soil collected from New South Wales, Australia. SRDI565 has a broad host range for nodulation within the clover genus, however N2-fixation is sub-optimal with some Trifolium species and ineffective with others. Here we describe the features of R. leguminosarum bv. trifolii strain SRDI565, together with genome sequence information and annotation. The 6,905,599 bp high-quality-draft genome is arranged into 7 scaffolds of 7 contigs, contains 6,750 protein-coding genes and 86 RNA-only encoding genes, and is one of 100 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.

摘要

三叶草根瘤菌三叶草生物型SRDI565（同义词N8-J）是一种需氧、运动、革兰氏阴性、不形成芽孢的杆菌。SRDI565是从在温室中种植并接种了从澳大利亚新南威尔士州采集的土壤的一年生三叶草地下三叶草亚种地下三叶草根部的一个根瘤中分离出来的。SRDI565在三叶草属内具有广泛的结瘤宿主范围，然而，与一些三叶草物种的固氮效果次优，与其他物种则无效。在这里，我们描述了三叶草根瘤菌三叶草生物型菌株SRDI565的特征，以及基因组序列信息和注释。这个6,905,599 bp的高质量草图基因组被排列成7个重叠群的7个支架，包含6,750个蛋白质编码基因和86个仅编码RNA的基因，并且是作为美国能源部联合基因组研究所2010年细菌和古菌基因组百科全书-根瘤菌（GEBA-RNB）项目的一部分测序的100个根瘤菌基因组之一。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/80846cf80b89/sigs.4468250-f9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/91519c23eaed/sigs.4468250-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/abf8b06ba13f/sigs.4468250-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/42db92beb5f0/sigs.4468250-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/bada624beffc/sigs.4468250-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/50b64c10d80d/sigs.4468250-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/6ffcdabb4239/sigs.4468250-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/d26f567fc4b1/sigs.4468250-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/a739fc47ad28/sigs.4468250-f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/80846cf80b89/sigs.4468250-f9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/91519c23eaed/sigs.4468250-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/abf8b06ba13f/sigs.4468250-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/42db92beb5f0/sigs.4468250-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/bada624beffc/sigs.4468250-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/50b64c10d80d/sigs.4468250-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/6ffcdabb4239/sigs.4468250-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/d26f567fc4b1/sigs.4468250-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/a739fc47ad28/sigs.4468250-f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/849f/4062631/80846cf80b89/sigs.4468250-f9.jpg

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