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结瘤于三叶草(Trifolium rueppellianum)的豆科根瘤菌(Rhizobium leguminosarum)三叶草生物型菌株WSM2012的基因组序列。

Genome sequence of the Trifolium rueppellianum -nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012.

作者信息

Reeve Wayne, Melino Vanessa, Ardley Julie, Tian Rui, De Meyer Sofie, Terpolilli Jason, Tiwari Ravi, Yates Ronald, O'Hara Graham, Howieson John, Ninawi Mohamed, Held Brittany, Bruce David, Detter Chris, Tapia Roxanne, Han Cliff, Wei Chia-Lin, Huntemann Marcel, Han James, Chen I-Min, Mavromatis Konstantinos, Markowitz Victor, Szeto Ernest, Ivanova Natalia, Mikhailova Natalia, Pagani Ioanna, Pati Amrita, Goodwin Lynne, Woyke Tanja, Kyrpides Nikos

机构信息

Centre for Rhizobium Studies, Murdoch University, Western Australia, Australia.

Centre for Rhizobium Studies, Murdoch University, Western Australia, Australia ; Department of Agriculture and Food, Western Australia, Australia.

出版信息

Stand Genomic Sci. 2013 Dec 15;9(2):283-93. doi: 10.4056/sigs.4528262. eCollection 2013 Dec 20.

DOI:10.4056/sigs.4528262
PMID:24976885
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4062638/
Abstract

Rhizobium leguminosarum bv. trifolii WSM2012 (syn. MAR1468) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an ineffective root nodule recovered from the roots of the annual clover Trifolium rueppellianum Fresen growing in Ethiopia. WSM2012 has a narrow, specialized host range for N2-fixation. Here we describe the features of R. leguminosarum bv. trifolii strain WSM2012, together with genome sequence information and annotation. The 7,180,565 bp high-quality-draft genome is arranged into 6 scaffolds of 68 contigs, contains 7,080 protein-coding genes and 86 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.

摘要

三叶草根瘤菌三叶草生物型WSM2012(同义词:MAR1468)是一种需氧、能运动、革兰氏阴性、不形成芽孢的杆菌,它是从埃塞俄比亚生长的一年生三叶草鲁氏三叶草根部回收的一个无效根瘤中分离出来的。WSM2012在固氮方面具有狭窄的、专门的宿主范围。在此,我们描述了三叶草根瘤菌三叶草生物型菌株WSM2012的特征,以及基因组序列信息和注释。这个7,180,565 bp的高质量草图基因组被排列成6个支架,由68个重叠群组成,包含7,080个蛋白质编码基因和86个仅编码RNA的基因,并且是美国能源部联合基因组研究所2010年社区测序计划测序的20个根瘤菌基因组之一。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d63/4062638/7a15b1835bb5/sigs.4528262-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d63/4062638/1c6973e9900d/sigs.4528262-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d63/4062638/56ff1f9be54f/sigs.4528262-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d63/4062638/7a15b1835bb5/sigs.4528262-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d63/4062638/1c6973e9900d/sigs.4528262-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d63/4062638/56ff1f9be54f/sigs.4528262-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d63/4062638/7a15b1835bb5/sigs.4528262-f3.jpg

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