Chaleckis Romanas, Ebe Masahiro, Pluskal Tomáš, Murakami Itsuo, Kondoh Hiroshi, Yanagida Mitsuhiro
Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, Japan.
Mol Biosyst. 2014 Oct;10(10):2538-51. doi: 10.1039/c4mb00346b.
Metabolomics, a modern branch of chemical biology, provides qualitative and quantitative information about the metabolic states of organisms or cells at the molecular level. Here we report non-targeted, metabolomic analyses of human blood, using liquid chromatography-mass spectrometry (LC-MS). We compared the blood metabolome to the previously reported metabolome of the fission yeast, Schizosaccharomyces pombe. The two metabolomic datasets were highly similar: 101 of 133 compounds identified in human blood (75%) were also present in S. pombe, and 45 of 57 compounds enriched in red blood cells (RBCs) (78%) were also present in yeast. The most abundant metabolites were ATP, glutathione, and glutamine. Apart from these three, the next most abundant metabolites were also involved in energy metabolism, anti-oxidation, and amino acid metabolism. We identified fourteen new blood compounds, eight of which were enriched in RBCs: citramalate, GDP-glucose, trimethyl-histidine, trimethyl-phenylalanine, trimethyl-tryptophan, trimethyl-tyrosine, UDP-acetyl-glucosamine, UDP-glucuronate, dimethyl-lysine, glutamate methyl ester, N-acetyl-(iso)leucine, N-acetyl-glutamate, N2-acetyl-lysine, and N6-acetyl-lysine. Ten of the newly identified blood metabolites were also detected in S. pombe, and ten of the 14 newly identified blood metabolites were methylated or acetylated amino acids. Trimethylated or acetylated free amino acids were also abundant in white blood cells. It may be possible to investigate their physiological roles using yeast genetics.
代谢组学是化学生物学的一个现代分支,它在分子水平上提供有关生物体或细胞代谢状态的定性和定量信息。在此,我们报告了使用液相色谱 - 质谱联用(LC - MS)对人体血液进行的非靶向代谢组学分析。我们将血液代谢组与先前报道的裂殖酵母(Schizosaccharomyces pombe)的代谢组进行了比较。这两个代谢组数据集高度相似:在人体血液中鉴定出的133种化合物中有101种(75%)也存在于粟酒裂殖酵母中,在红细胞(RBC)中富集的57种化合物中有45种(78%)也存在于酵母中。最丰富的代谢物是三磷酸腺苷(ATP)、谷胱甘肽和谷氨酰胺。除了这三种,接下来最丰富的代谢物也参与能量代谢、抗氧化和氨基酸代谢。我们鉴定出14种新的血液化合物,其中8种在红细胞中富集:柠苹酸、GDP - 葡萄糖、三甲基组氨酸、三甲基苯丙氨酸、三甲基色氨酸、三甲基酪氨酸、UDP - 乙酰葡糖胺、UDP - 葡糖醛酸、二甲基赖氨酸、谷氨酸甲酯、N - 乙酰 - (异)亮氨酸、N - 乙酰谷氨酸、N2 - 乙酰赖氨酸和N6 - 乙酰赖氨酸。新鉴定出的血液代谢物中有10种也在粟酒裂殖酵母中被检测到,并且新鉴定出的14种血液代谢物中有10种是甲基化或乙酰化的氨基酸。三甲基化或乙酰化的游离氨基酸在白细胞中也很丰富。利用酵母遗传学研究它们的生理作用可能是可行的。