Woldeyes Rahel A, Sivak David A, Fraser James S
Chemistry and Chemical Biology Graduate Program, University of California, San Francisco, San Francisco, CA 94158, United States.
Center for Systems and Synthetic Biology, University of California, San Francisco, San Francisco, CA 94158, United States.
Curr Opin Struct Biol. 2014 Oct;28:56-62. doi: 10.1016/j.sbi.2014.07.005. Epub 2014 Aug 9.
Several distinct computational approaches have recently been implemented to represent conformational heterogeneity from X-ray crystallography datasets that are averaged in time and space. As these modeling methods mature, newly discovered alternative conformations are being used to derive functional protein mechanisms. Room temperature X-ray data collection is emerging as a key variable for sampling functionally relevant conformations also observed in solution studies. Although concerns about radiation damage are warranted with higher temperature data collection, 'diffract and destroy' strategies on X-ray free electron lasers may permit radiation damage-free data collection. X-ray crystallography need not be confined to 'static unique snapshots'; these experimental and computational advances are revealing how the many conformations populated within a single crystal are used in biological mechanisms.
最近已经实施了几种不同的计算方法,以从在时间和空间上平均的X射线晶体学数据集中表示构象异质性。随着这些建模方法的成熟,新发现的替代构象正被用于推导功能性蛋白质机制。室温X射线数据收集正在成为一个关键变量,用于对在溶液研究中也观察到的功能相关构象进行采样。尽管对于更高温度的数据收集,对辐射损伤的担忧是合理的,但X射线自由电子激光上的“衍射并破坏”策略可能允许无辐射损伤的数据收集。X射线晶体学不必局限于“静态唯一快照”;这些实验和计算进展正在揭示单晶中存在的多种构象如何用于生物学机制。