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米勒在原子计算机模拟方面的实验。

Miller experiments in atomistic computer simulations.

作者信息

Saitta Antonino Marco, Saija Franz

机构信息

Sorbonne Universités, Université Pierre et Marie Curie Paris 06, Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, Unité Mixte de Recherche 7590, 75005 Paris, France; Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7590, Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, 75005 Paris, France; and

CNR-Istituto per i Processi Chimico-Fisici, V. le F. Stagno d'Alcontres 37, 98158 Messina, Italy

出版信息

Proc Natl Acad Sci U S A. 2014 Sep 23;111(38):13768-73. doi: 10.1073/pnas.1402894111. Epub 2014 Sep 8.

Abstract

The celebrated Miller experiments reported on the spontaneous formation of amino acids from a mixture of simple molecules reacting under an electric discharge, giving birth to the research field of prebiotic chemistry. However, the chemical reactions involved in those experiments have never been studied at the atomic level. Here we report on, to our knowledge, the first ab initio computer simulations of Miller-like experiments in the condensed phase. Our study, based on the recent method of treatment of aqueous systems under electric fields and on metadynamics analysis of chemical reactions, shows that glycine spontaneously forms from mixtures of simple molecules once an electric field is switched on and identifies formic acid and formamide as key intermediate products of the early steps of the Miller reactions, and the crucible of formation of complex biological molecules.

摘要

著名的米勒实验报道了在放电条件下,简单分子混合物自发形成氨基酸的过程,开创了前生物化学这一研究领域。然而,这些实验中所涉及的化学反应从未在原子层面上进行过研究。在此,据我们所知,我们首次报道了在凝聚相中对类似米勒实验的从头算计算机模拟。我们的研究基于近期处理电场下水溶液体系的方法以及化学反应的元动力学分析,结果表明,一旦开启电场,甘氨酸就能从简单分子混合物中自发形成,并且确定甲酸和甲酰胺是米勒反应早期步骤的关键中间产物,也是复杂生物分子形成的关键环节。

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