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SMART:2015年的近期更新、新进展及现状

SMART: recent updates, new developments and status in 2015.

作者信息

Letunic Ivica, Doerks Tobias, Bork Peer

机构信息

Biobyte solutions GmbH, Bothestr 142, 69126 Heidelberg, Germany.

EMBL, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

出版信息

Nucleic Acids Res. 2015 Jan;43(Database issue):D257-60. doi: 10.1093/nar/gku949. Epub 2014 Oct 9.

DOI:10.1093/nar/gku949
PMID:25300481
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4384020/
Abstract

SMART (Simple Modular Architecture Research Tool) is a web resource (http://smart.embl.de/) providing simple identification and extensive annotation of protein domains and the exploration of protein domain architectures. In the current version, SMART contains manually curated models for more than 1200 protein domains, with ∼ 200 new models since our last update article. The underlying protein databases were synchronized with UniProt, Ensembl and STRING, bringing the total number of annotated domains and other protein features above 100 million. SMART's 'Genomic' mode, which annotates proteins from completely sequenced genomes was greatly expanded and now includes 2031 species, compared to 1133 in the previous release. SMART analysis results pages have been completely redesigned and include links to several new information sources. A new, vector-based display engine has been developed for protein schematics in SMART, which can also be exported as high-resolution bitmap images for easy inclusion into other documents. Taxonomic tree displays in SMART have been significantly improved, and can be easily navigated using the integrated search engine.

摘要

SMART(简单模块化架构研究工具)是一个网络资源(http://smart.embl.de/),可提供蛋白质结构域的简单识别、广泛注释以及对蛋白质结构域架构的探索。在当前版本中,SMART包含1200多个蛋白质结构域的人工整理模型,自我们上次更新文章以来新增了约200个模型。基础蛋白质数据库已与UniProt、Ensembl和STRING同步,使注释结构域和其他蛋白质特征的总数超过1亿。SMART的“基因组”模式可对来自完全测序基因组的蛋白质进行注释,该模式已大幅扩展,目前涵盖2031个物种,而上一版本为1133个。SMART分析结果页面已完全重新设计,并包含指向多个新信息源的链接。已为SMART中的蛋白质示意图开发了一种新的基于矢量的显示引擎,该引擎还可导出为高分辨率位图图像,以便轻松插入到其他文档中。SMART中的分类树显示已显著改进,可使用集成搜索引擎轻松浏览。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/83a1/4384020/0ed358ff1906/gku949fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/83a1/4384020/ca0c0b748c02/gku949fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/83a1/4384020/0ed358ff1906/gku949fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/83a1/4384020/ca0c0b748c02/gku949fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/83a1/4384020/0ed358ff1906/gku949fig2.jpg

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