Bos Kirsten I, Jäger Günter, Schuenemann Verena J, Vågene Åshild J, Spyrou Maria A, Herbig Alexander, Nieselt Kay, Krause Johannes
Department of Archaeological Sciences, University of Tübingen, Tübingen 72070, Germany
Centre for Bioinformatics Tübingen (ZBIT), University of Tübingen, Tübingen 72070, Germany.
Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130375. doi: 10.1098/rstb.2013.0375.
DNA capture coupled with next generation sequencing is highly suitable for the study of ancient pathogens. Screening for pathogens can, however, be meticulous when assays are restricted to the enrichment of single organisms, which is common practice. Here, we report on an array-based DNA capture screening technique for the parallel detection of nearly 100 pathogens that could have potentially left behind molecular signatures in preserved ancient tissues. We demonstrate the sensitivity of our method through evaluation of its performance with a library known to harbour ancient Mycobacterium leprae DNA. This rapid and economical technique will be highly useful for the identification of historical diseases that are difficult to characterize based on archaeological information alone.
DNA捕获与新一代测序相结合非常适合用于古代病原体的研究。然而,当检测仅限于单一生物体的富集时,病原体筛查可能会很细致,这是常见的做法。在这里,我们报告了一种基于阵列的DNA捕获筛查技术,用于并行检测近100种病原体,这些病原体可能在保存下来的古代组织中留下了分子特征。我们通过用一个已知含有古代麻风分枝杆菌DNA的文库评估其性能,证明了我们方法的灵敏度。这种快速且经济的技术对于识别仅根据考古信息难以表征的历史疾病将非常有用。