Roly Zahida Yesmin, Hasan Sm Naimul, Ferdaus Kmkb, Reza Md Abu
Department of Genetic Engineering and Biotechnology, Faculty of Life and Earth Science, University of Rajshahi, Rajshahi-6205,Bangladesh ; Authors equally contributed.
Assistant Professor, Department of Genetic Engineering and Biotechnology, University of Rajshahi, Rajshahi -6205,Bangladesh.
Bioinformation. 2014 Oct 30;10(10):617-22. doi: 10.6026/97320630010617. eCollection 2014.
Snake venoms are cocktails comprising combinations of different proteins, peptides, enzymes and toxins. Snake toxins have diverse characteristics having different molecular configuration, structure and mode of action. Many toxins derived from snake venom have distinct pharmacological activities. Venom from Bungarus fasciatus (commonly known as banded krait) is a species of elapid snake found on the South East Asia and Indian sub-continent, mainly contains neurotoxins. Beta bungartotoxin is the major fraction of Bungarus venom and particularly act pre-synaptically by obstructing neurotransmitter release. This toxin in other snake species functionally forms a heterodimer containing two different subunits (A and B). Dimerization of these two chains is a pre-requisite for the proper functionality of this protein. However, B. fasciatus bungartotoxin contains only B chain and their structural orientation in yet to be resolved. Therefore, it is of interest to describe the predicted structure model of the toxin for functional insights. In this work we analyzed the neurotoxic nature, their alignments, secondary and three dimensional structures, functions, active sites and stability with the help of different bioinformatical tools. A comprehensive analysis of the predicted model provides approaching to the functional interpretation of its molecular action.
蛇毒是由不同蛋白质、肽、酶和毒素组合而成的混合物。蛇毒素具有多样的特性,包括不同的分子构型、结构和作用方式。许多源自蛇毒的毒素具有独特的药理活性。金环蛇(俗称环纹海蛇)的毒液是一种眼镜蛇科蛇类的毒液,在东南亚和印度次大陆被发现,主要含有神经毒素。β-金环蛇毒素是金环蛇毒液的主要成分,尤其通过阻碍神经递质释放而在突触前起作用。这种毒素在其他蛇类物种中在功能上形成一个包含两个不同亚基(A和B)的异二聚体。这两条链的二聚化是该蛋白质正常功能的先决条件。然而,金环蛇的金环蛇毒素仅包含B链,其结构取向尚未得到解决。因此,描述该毒素的预测结构模型以获得功能见解是很有意义的。在这项工作中,我们借助不同的生物信息学工具分析了其神经毒性性质、比对、二级和三维结构、功能、活性位点和稳定性。对预测模型的全面分析为其分子作用的功能解释提供了途径。