• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

工程化生物回路中的模块化、语境相关性和隔离性。

Modularity, context-dependence, and insulation in engineered biological circuits.

机构信息

Department of Mechanical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA, USA.

出版信息

Trends Biotechnol. 2015 Feb;33(2):111-9. doi: 10.1016/j.tibtech.2014.11.009. Epub 2014 Dec 24.

DOI:10.1016/j.tibtech.2014.11.009
PMID:25544476
Abstract

The ability to link systems together such that they behave as predicted once they interact with each other is an essential requirement for the forward-engineering of robust synthetic biological circuits. Unfortunately, because of context-dependencies, parts and functional modules often behave unpredictably once interacting in the cellular environment. This paper reviews recent advances toward establishing a rigorous engineering framework for insulating parts and modules from their context to improve modularity. Overall, a synergy between engineering better parts and higher-level circuit design will be important to resolve the problem of context-dependence.

摘要

能够将系统连接在一起,使它们在相互作用后表现出预期的行为,这是正向工程构建稳健的合成生物电路的基本要求。不幸的是,由于上下文相关性,部件和功能模块在细胞环境中相互作用时常常表现出不可预测的行为。本文综述了在建立严格的工程框架以将部件和模块与其上下文隔离开来提高模块性方面的最新进展。总的来说,改进部件和更高层次的电路设计之间的协同作用对于解决上下文相关性问题将是重要的。

相似文献

1
Modularity, context-dependence, and insulation in engineered biological circuits.工程化生物回路中的模块化、语境相关性和隔离性。
Trends Biotechnol. 2015 Feb;33(2):111-9. doi: 10.1016/j.tibtech.2014.11.009. Epub 2014 Dec 24.
2
The imminent role of protein engineering in synthetic biology.蛋白质工程在合成生物学中的即将到来的作用。
Biotechnol Adv. 2012 May-Jun;30(3):541-9. doi: 10.1016/j.biotechadv.2011.09.008. Epub 2011 Sep 21.
3
Modularization of genetic elements promotes synthetic metabolic engineering.遗传元件的模块化促进了合成代谢工程。
Biotechnol Adv. 2015 Nov 15;33(7):1412-9. doi: 10.1016/j.biotechadv.2015.04.002. Epub 2015 Apr 11.
4
Toward metabolic engineering in the context of system biology and synthetic biology: advances and prospects.在系统生物学和合成生物学的背景下进行代谢工程:进展与展望。
Appl Microbiol Biotechnol. 2015 Feb;99(3):1109-18. doi: 10.1007/s00253-014-6298-y. Epub 2014 Dec 31.
5
Tools and Principles for Microbial Gene Circuit Engineering.微生物基因电路工程的工具和原理。
J Mol Biol. 2016 Feb 27;428(5 Pt B):862-88. doi: 10.1016/j.jmb.2015.10.004. Epub 2015 Oct 20.
6
Coping with complexity in metabolic engineering.应对代谢工程中的复杂性。
Trends Biotechnol. 2013 Jan;31(1):52-60. doi: 10.1016/j.tibtech.2012.10.010. Epub 2012 Nov 23.
7
Protein design in systems metabolic engineering for industrial strain development.在系统代谢工程中进行蛋白质设计以开发工业菌株。
Biotechnol J. 2013 May;8(5):523-33. doi: 10.1002/biot.201200238. Epub 2013 Apr 16.
8
Engineering molecular circuits using synthetic biology in mammalian cells.利用合成生物学在哺乳动物细胞中构建分子电路。
Annu Rev Chem Biomol Eng. 2012;3:209-34. doi: 10.1146/annurev-chembioeng-061010-114145. Epub 2012 Mar 29.
9
Protein engineering for metabolic engineering: current and next-generation tools.蛋白质工程在代谢工程中的应用:当前及下一代工具。
Biotechnol J. 2013 May;8(5):545-55. doi: 10.1002/biot.201200371. Epub 2013 Apr 16.
10
Layering genetic circuits to build a single cell, bacterial half adder.通过分层构建基因回路以制造单细胞细菌半加器。
BMC Biol. 2015 Jun 16;13:40. doi: 10.1186/s12915-015-0146-0.

引用本文的文献

1
Resource competition-driven bistability and stochastic switching amplify gene expression noise.资源竞争驱动的双稳态和随机切换放大了基因表达噪声。
PLoS Comput Biol. 2025 Apr 23;21(4):e1012931. doi: 10.1371/journal.pcbi.1012931. eCollection 2025 Apr.
2
Noise Reduction in Resource-Coupled Multi-Module Gene Circuits through Antithetic Feedback Control.通过对偶反馈控制降低资源耦合多模块基因电路中的噪声
Proc IEEE Conf Decis Control. 2024 Dec;2024:5566-5571. doi: 10.1109/cdc56724.2024.10886586.
3
Fine-Tuning Genetic Circuits via Host Context and RBS Modulation.
通过宿主环境和核糖体结合位点调控对遗传回路进行微调
ACS Synth Biol. 2025 Jan 17;14(1):193-205. doi: 10.1021/acssynbio.4c00551. Epub 2025 Jan 4.
4
Mitigating Winner-Take-All Resource Competition through Antithetic Control Mechanism.通过对偶控制机制缓解赢家通吃的资源竞争
ACS Synth Biol. 2024 Dec 20;13(12):4050-4060. doi: 10.1021/acssynbio.4c00476. Epub 2024 Dec 6.
5
Phase Separation to Resolve Growth-Related Circuit Failures.相分离以解决与生长相关的电路故障。
bioRxiv. 2024 Nov 3:2024.11.01.621586. doi: 10.1101/2024.11.01.621586.
6
Pangenomic landscapes shape performances of a synthetic genetic circuit across species.泛基因组景观塑造了合成遗传回路在不同物种中的表现。
mSystems. 2024 Sep 17;9(9):e0084924. doi: 10.1128/msystems.00849-24. Epub 2024 Aug 21.
7
Transfer learning for cross-context prediction of protein expression from 5'UTR sequence.从 5'UTR 序列跨情境预测蛋白质表达的迁移学习
Nucleic Acids Res. 2024 Jul 22;52(13):e58. doi: 10.1093/nar/gkae491.
8
Noise Reduction in Resource-Coupled Multi-Module Gene Circuits through Antithetic Feedback Control.通过对偶反馈控制降低资源耦合多模块基因电路中的噪声
bioRxiv. 2024 May 24:2024.05.24.595570. doi: 10.1101/2024.05.24.595570.
9
Context-dependent redesign of robust synthetic gene circuits.上下文相关的稳健合成基因电路的重新设计。
Trends Biotechnol. 2024 Jul;42(7):895-909. doi: 10.1016/j.tibtech.2024.01.003. Epub 2024 Feb 5.
10
Enhancing circuit stability under growth feedback with supplementary repressive regulation.通过生长反馈增强回路稳定性,并辅以抑制性调控。
Nucleic Acids Res. 2024 Feb 9;52(3):1512-1521. doi: 10.1093/nar/gkad1233.