Srinivasan Sathiyaraj, Lee Jae-Jin, Park Kyoung Ryun, Park Se-Hee, Jung Hee-Young, Kim Myung Kyum
Department of Bio & Environmental Technology, College of Natural Science, Seoul Women's University, Seoul, 139-774, Republic of Korea.
Curr Microbiol. 2015 May;70(5):643-50. doi: 10.1007/s00284-014-0760-z. Epub 2015 Jan 9.
A Gram-negative, UV tolerant bacterial strain, DG7A(T), was isolated from soil samples collected in Seoul city, South Korea. The cells were grown on R2A agar at 25 °C and were pink to red in color. The DNA G+C content of the novel strain DG7A was 63.5 mol%. Chemotaxonomic data revealed that the strains contain the major fatty acids iso-C15:0, anteiso-C15:0, and summed feature 3 (16:1 ω7c/16:1 ω6c), with phosphatidylethanolamine as the major polar lipid. Phylogenetic analysis of the 16S rRNA gene sequences showed that strain DG7A(T) formed a distinct phylogenetic line along with Hymenobacter soli PB17(T), and they shared approximately 98.35 % 16S rRNA gene sequence similarity. However, these two strains shared only 5.3 % pairwise similarity (reciprocal analysis, 36.3 %) in their genomic DNA. The next highest degree of 16S rRNA gene sequence similarity after H. soli PB17(T) was found with H. glaciei VUG-A130(T) (96.78 %), H. antarcticus VUG-A42aa(T) (96.66 %), and H. saemangeumensis GSR0100(T) (96.57 %). Based on the phylogenetic analysis and analysis of the physiological and biochemical characteristics, this isolate was considered to represent a novel species, for which we propose the name Hymenobacter terrae sp. nov., with type strain DG7A(T) (= KCTC 32554(T) = KEMB 9004-164(T )= JCM 30007(T)).
从韩国首尔市采集的土壤样本中分离出了一株革兰氏阴性、耐紫外线的细菌菌株DG7A(T)。该菌株在25℃的R2A琼脂培养基上生长,颜色为粉红色至红色。新菌株DG7A的DNA G+C含量为63.5 mol%。化学分类学数据显示,该菌株含有主要脂肪酸异C15:0、anteiso-C15:0和总和特征3(16:1 ω7c/16:1 ω6c),主要极性脂为磷脂酰乙醇胺。对16S rRNA基因序列的系统发育分析表明,菌株DG7A(T)与土壤膜菌PB17(T)形成了一个独特的系统发育分支,它们的16S rRNA基因序列相似度约为98.35%。然而,这两个菌株的基因组DNA仅具有5.3%的成对相似度(相互分析,36.3%)。在土壤膜菌PB17(T)之后,16S rRNA基因序列相似度次高的是冰川膜菌VUG-A130(T)(96.78%)、南极膜菌VUG-A42aa(T)(96.66%)和新万金膜菌GSR0100(T)(96.57%)。基于系统发育分析以及生理生化特征分析,该分离株被认为代表一个新物种,我们将其命名为土壤膜菌(Hymenobacter terrae sp. nov.),模式菌株为DG7A(T)(= KCTC 32554(T) = KEMB 9004-164(T )= JCM 30007(T))。