Bruno Kessler Foundation, Trento, Italy.
Laboratory for the Modeling of Biological and Socio-Technical Systems, Northeastern University, Boston, MA, USA.
Lancet Infect Dis. 2015 Feb;15(2):204-11. doi: 10.1016/S1473-3099(14)71074-6. Epub 2015 Jan 7.
The 2014 epidemic of Ebola virus disease in parts of west Africa defines an unprecedented health threat. We developed a model of Ebola virus transmission that integrates detailed geographical and demographic data from Liberia to overcome the limitations of non-spatial approaches in projecting the disease dynamics and assessing non-pharmaceutical control interventions.
We modelled the movements of individuals, including patients not infected with Ebola virus, seeking assistance in health-care facilities, the movements of individuals taking care of patients infected with Ebola virus not admitted to hospital, and the attendance of funerals. Individuals were grouped into randomly assigned households (size based on Demographic Health Survey data) that were geographically placed to match population density estimates on a grid of 3157 cells covering the country. The spatial agent-based model was calibrated with a Markov chain Monte Carlo approach. The model was used to estimate Ebola virus transmission parameters and investigate the effectiveness of interventions such as availability of Ebola treatment units, safe burials procedures, and household protection kits.
Up to Aug 16, 2014, we estimated that 38·3% of infections (95% CI 17·4-76·4) were acquired in hospitals, 30·7% (14·1-46·4) in households, and 8·6% (3·2-11·8) while participating in funerals. We noted that the movement and mixing, in hospitals at the early stage of the epidemic, of patients infected with Ebola virus and those not infected was a sufficient driver of the reported pattern of spatial spread. The subsequent decrease of incidence at country and county level is attributable to the increasing availability of Ebola treatment units (which in turn contributed to drastically decreased hospital transmission), safe burials, and distribution of household protection kits.
The model allows assessment of intervention options and the understanding of their role in the decrease in incidence reported since Sept 7, 2014. High-quality data (eg, to estimate household secondary attack rate, contact patterns within hospitals, and effects of ongoing interventions) are needed to reduce uncertainty in model estimates.
US Defense Threat Reduction Agency, US National Institutes of Health.
2014 年西非部分地区的埃博拉病毒病疫情构成了前所未有的健康威胁。我们开发了一种埃博拉病毒传播模型,该模型整合了来自利比里亚的详细地理和人口数据,以克服非空间方法在预测疾病动态和评估非药物控制干预措施方面的局限性。
我们对个人的流动进行建模,包括未感染埃博拉病毒的寻求医疗机构援助的患者、未住院照顾感染埃博拉病毒的患者的个人、以及参加葬礼的个人。个人被分为随机分配的家庭(根据人口健康调查数据确定大小),这些家庭被放置在与覆盖全国的 3157 个单元格的人口密度估计值相匹配的地理位置。空间基于代理的模型通过马尔可夫链蒙特卡罗方法进行校准。该模型用于估计埃博拉病毒传播参数,并研究干预措施的有效性,例如埃博拉治疗单位的可用性、安全埋葬程序和家庭保护包。
截至 2014 年 8 月 16 日,我们估计 38.3%(95%CI 17.4-76.4)的感染是在医院获得的,30.7%(14.1-46.4)是在家庭中获得的,8.6%(3.2-11.8)是在参加葬礼时获得的。我们注意到,在疫情早期,感染埃博拉病毒的患者与未感染的患者在医院中的流动和混合是报告的空间传播模式的充分驱动因素。随后,国家和县级发病率的下降归因于埃博拉治疗单位可用性的增加(这反过来又大大降低了医院传播)、安全埋葬和家庭保护包的分发。
该模型允许评估干预措施,并了解其在 2014 年 9 月 7 日以来报告的发病率下降中的作用。需要高质量的数据(例如,估计家庭二次攻击率、医院内的接触模式以及正在进行的干预措施的效果)来降低模型估计的不确定性。
美国国防威胁降低局,美国国立卫生研究院。