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通过基于亲和力的蛋白质组分析方法对激酶抑制剂进行多重成像和细胞靶点鉴定。

Multiplex imaging and cellular target identification of kinase inhibitors via an affinity-based proteome profiling approach.

作者信息

Su Ying, Pan Sijun, Li Zhengqiu, Li Lin, Wu Xiaoyuan, Hao Piliang, Sze Siu Kwan, Yao Shao Q

机构信息

Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543.

School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551.

出版信息

Sci Rep. 2015 Jan 12;5:7724. doi: 10.1038/srep07724.

DOI:10.1038/srep07724
PMID:25579846
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4290084/
Abstract

MLN8237 is a highly potent and presumably selective inhibitor of Aurora kinase A (AKA) and has shown promising antitumor activities. Like other kinase inhibitors which target the ATP-binding site of kinases, MLN8237 might be expected to have potential cellular off-targets. Herein, we report the first photoaffinity-based, small molecule AKA probe capable of both live-cell imaging of AKA activities and in situ proteome profiling of potential off-targets of MLN8237 (including AKA-associating proteins). By using two mutually compatible, bioorthogonal reactions (copper-catalyzed azide-alkyne cycloaddition chemistry and TCO-tetrazine ligation), we demostrate small molecule-based multiplex bioimaging for simultaneous in situ monitoring of two important cell-cycle regulating kinases (AKA and CDK1). A broad range of proteins, as potential off-targets of MLN8237 and AKA's-interacting partners, is subsequently identified by affinity-based proteome profiling coupled with large-scale LC-MS/MS analysis. From these studies, we discover novel AKA interactions which were further validated by cell-based immunoprecipitation (IP) experiments.

摘要

MLN8237是一种高效且可能具有选择性的极光激酶A(AKA)抑制剂,并已显示出有前景的抗肿瘤活性。与其他靶向激酶ATP结合位点的激酶抑制剂一样,预计MLN8237可能存在潜在的细胞脱靶效应。在此,我们报道了首个基于光亲和性的小分子AKA探针,它既能对AKA活性进行活细胞成像,又能对MLN8237的潜在脱靶蛋白(包括与AKA相关的蛋白)进行原位蛋白质组分析。通过使用两种相互兼容的生物正交反应(铜催化的叠氮化物-炔烃环加成化学和反式环辛烯-四嗪连接反应),我们展示了基于小分子的多重生物成像技术,用于同时原位监测两种重要的细胞周期调节激酶(AKA和细胞周期蛋白依赖性激酶1)。随后,通过基于亲和性的蛋白质组分析结合大规模液相色谱-串联质谱分析,鉴定出了一系列作为MLN8237潜在脱靶蛋白以及AKA相互作用伴侣的蛋白质。通过这些研究,我们发现了新的AKA相互作用,并通过基于细胞的免疫沉淀(IP)实验进一步验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b82d/4290084/55eb2bbca2d7/srep07724-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b82d/4290084/bbdd92fbdcde/srep07724-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b82d/4290084/9ff5b5c0111c/srep07724-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b82d/4290084/d93b168f6b2e/srep07724-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b82d/4290084/55eb2bbca2d7/srep07724-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b82d/4290084/bbdd92fbdcde/srep07724-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b82d/4290084/9ff5b5c0111c/srep07724-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b82d/4290084/d93b168f6b2e/srep07724-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b82d/4290084/55eb2bbca2d7/srep07724-f4.jpg

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3
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4
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5
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6
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7
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