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对克拉霉素最低抑菌浓度低和中等的脓肿分枝杆菌脓肿亚种分离株进行erm(41)基因测序的效用

Utility of sequencing the erm(41) gene in isolates of Mycobacterium abscessus subsp. abscessus with low and intermediate clarithromycin MICs.

作者信息

Brown-Elliott Barbara A, Vasireddy Sruthi, Vasireddy Ravikiran, Iakhiaeva Elena, Howard Susan T, Nash Kevin, Parodi Nicholas, Strong Anita, Gee Martha, Smith Terry, Wallace Richard J

机构信息

Mycobacteria/Nocardia Laboratory, University of Texas Health Science Center at Tyler, Tyler, Texas, USA

Mycobacteria/Nocardia Laboratory, University of Texas Health Science Center at Tyler, Tyler, Texas, USA.

出版信息

J Clin Microbiol. 2015 Apr;53(4):1211-5. doi: 10.1128/JCM.02950-14. Epub 2015 Feb 4.

DOI:10.1128/JCM.02950-14
PMID:25653399
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4365201/
Abstract

The erm(41) gene confers inducible macrolide resistance in Mycobacterium abscessus subsp. abscessus, calling into question the usefulness of macrolides for treating M. abscessus subsp. abscessus infections. With an extended incubation (14 days), isolates with MICs of ≥8 μg/ml are considered macrolide resistant by current CLSI guidelines. Our goals were to determine the incidence of macrolide susceptibility in U.S. isolates, the validity of currently accepted MIC breakpoints, and the erm(41) sequences associated with susceptibility. Of 349 isolates (excluding those with 23S rRNA gene mutations), 85 (24%) had clarithromycin MICs of ≤8 μg/ml. Sequencing of the erm(41) genes from these isolates, as well as from isolates with MICs of ≥16 μg/ml, including ATCC 19977T, revealed 10 sequevars. The sequence in ATCC 19977T was designated sequevar (type) 1; most macrolide-resistant isolates were of this type. Seven sequevars contained isolates with MICs of >16 μg/ml. The T28C substitution in erm(41), previously associated with macrolide susceptibility, was identified in 62 isolates (18%) comprising three sequevars, with MICs of ≤2 (80%), 4 (10%), and 8 (10%) μg/ml. No other nucleotide substitution was associated with macrolide susceptibility. We recommend that clarithromycin susceptibility breakpoints for M. abscessus subsp. abscessus be changed from ≤2 to ≤4 μg/ml and that isolates with an MIC of 8 μg/ml have repeat MIC testing or erm sequencing performed. Our studies suggest that macrolides are useful for treating approximately 20% of U.S. isolates of M. abscessus subsp. abscessus. Sequencing of the erm gene of M. abscessus subsp. abscessus will predict inducible macrolide susceptibility.

摘要

erm(41)基因可使脓肿分枝杆菌脓肿亚种产生诱导型大环内酯类耐药性,这使得大环内酯类药物在治疗脓肿分枝杆菌脓肿亚种感染方面的有效性受到质疑。按照当前美国临床和实验室标准协会(CLSI)指南,经过延长培养(14天)后,最低抑菌浓度(MIC)≥8μg/ml的分离株被视为大环内酯类耐药。我们的目标是确定美国分离株中大环内酯类药物敏感性的发生率、当前公认的MIC断点的有效性以及与敏感性相关的erm(41)序列。在349株分离株(不包括那些23S rRNA基因突变的分离株)中,85株(24%)的克拉霉素MIC≤8μg/ml。对这些分离株以及MIC≥16μg/ml的分离株(包括ATCC 19977T)的erm(41)基因进行测序,发现了10个序列变体。ATCC 19977T中的序列被指定为序列变体(类型)1;大多数大环内酯类耐药分离株属于这种类型。7个序列变体包含MIC>16μg/ml的分离株。在62株(18%)分离株中鉴定出erm(41)基因中的T28C替换,这些分离株包含三个序列变体,MIC分别为≤2μg/ml(80%)、4μg/ml(10%)和8μg/ml(10%)。没有其他核苷酸替换与大环内酯类药物敏感性相关。我们建议将脓肿分枝杆菌脓肿亚种的克拉霉素敏感性断点从≤2μg/ml改为≤4μg/ml,并且MIC为8μg/ml的分离株应进行重复MIC检测或erm基因测序。我们的研究表明,大环内酯类药物可用于治疗约20%的美国脓肿分枝杆菌脓肿亚种分离株。对脓肿分枝杆菌脓肿亚种的erm基因进行测序将预测诱导型大环内酯类药物敏感性。

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Antimicrob Agents Chemother. 2011 Feb;55(2):775-81. doi: 10.1128/AAC.00861-10. Epub 2010 Dec 6.
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Mycobacterium massiliense is differentiated from Mycobacterium abscessus and Mycobacterium bolletii by erythromycin ribosome methyltransferase gene (erm) and clarithromycin susceptibility patterns.马赛分枝杆菌可通过红霉素核糖体甲基化酶基因 (erm) 和克拉霉素药敏模式与脓肿分枝杆菌和博莱氏分枝杆菌相区分。
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rpoB gene sequence-based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov.基于rpoB基因序列对新出现的非结核分枝杆菌进行特征分析,并描述新种博莱蒂分枝杆菌、海豹分枝杆菌和奥巴涅分枝杆菌
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