Ecoinformatics & Biodiversity, Department of Bioscience, Aarhus University Ny Munkegade 114, Aarhus C, DK-8000, Denmark.
Ecology & Evolutionary Biology, University of Arizona Biosciences West 310, Tuscon, Arizona, 85721.
Ecol Evol. 2015 Feb;5(3):807-20. doi: 10.1002/ece3.1405. Epub 2015 Jan 21.
Macro-scale species richness studies often use museum specimens as their main source of information. However, such datasets are often strongly biased due to variation in sampling effort in space and time. These biases may strongly affect diversity estimates and may, thereby, obstruct solid inference on the underlying diversity drivers, as well as mislead conservation prioritization. In recent years, this has resulted in an increased focus on developing methods to correct for sampling bias. In this study, we use sample-size-correcting methods to examine patterns of tropical plant diversity in Ecuador, one of the most species-rich and climatically heterogeneous biodiversity hotspots. Species richness estimates were calculated based on 205,735 georeferenced specimens of 15,788 species using the Margalef diversity index, the Chao estimator, the second-order Jackknife and Bootstrapping resampling methods, and Hill numbers and rarefaction. Species richness was heavily correlated with sampling effort, and only rarefaction was able to remove this effect, and we recommend this method for estimation of species richness with "big data" collections.
宏观尺度物种丰富度研究通常使用博物馆标本作为其主要信息来源。然而,由于空间和时间采样努力的变化,这些数据集往往存在严重的偏差。这些偏差可能会强烈影响多样性估计,并因此阻碍对潜在多样性驱动因素的可靠推断,以及误导保护优先级。近年来,人们越来越关注开发纠正采样偏差的方法。在这项研究中,我们使用样本大小校正方法来研究厄瓜多尔的热带植物多样性模式,厄瓜多尔是物种最丰富和气候最不均匀的生物多样性热点之一。使用 Margalef 多样性指数、Chao 估计器、二阶 Jackknife 和 Bootstrap 重采样方法以及 Hill 数和稀疏化,根据 15788 个物种的 205735 个地理参考标本计算了物种丰富度估计值。物种丰富度与采样努力密切相关,只有稀疏化才能消除这种影响,我们建议使用“大数据”收集来估计物种丰富度时使用该方法。