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八个地理上偏远的陆地温泉的比较宏基因组学

Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs.

作者信息

Menzel Peter, Gudbergsdóttir Sóley Ruth, Rike Anne Gunn, Lin Lianbing, Zhang Qi, Contursi Patrizia, Moracci Marco, Kristjansson Jakob K, Bolduc Benjamin, Gavrilov Sergey, Ravin Nikolai, Mardanov Andrey, Bonch-Osmolovskaya Elizaveta, Young Mark, Krogh Anders, Peng Xu

机构信息

Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark.

出版信息

Microb Ecol. 2015 Aug;70(2):411-24. doi: 10.1007/s00248-015-0576-9. Epub 2015 Feb 25.

Abstract

Hot springs are natural habitats for thermophilic Archaea and Bacteria. In this paper, we present the metagenomic analysis of eight globally distributed terrestrial hot springs from China, Iceland, Italy, Russia, and the USA with a temperature range between 61 and 92 (∘)C and pH between 1.8 and 7. A comparison of the biodiversity and community composition generally showed a decrease in biodiversity with increasing temperature and decreasing pH. Another important factor shaping microbial diversity of the studied sites was the abundance of organic substrates. Several species of the Crenarchaeal order Thermoprotei were detected, whereas no single bacterial species was found in all samples, suggesting a better adaptation of certain archaeal species to different thermophilic environments. Two hot springs show high abundance of Acidithiobacillus, supporting the idea of a true thermophilic Acidithiobacillus species that can thrive in hyperthermophilic environments. Depending on the sample, up to 58 % of sequencing reads could not be assigned to a known phylum, reinforcing the fact that a large number of microorganisms in nature, including those thriving in hot environments remain to be isolated and characterized.

摘要

温泉是嗜热古菌和细菌的天然栖息地。在本文中,我们展示了对来自中国、冰岛、意大利、俄罗斯和美国的八个全球分布的陆地温泉的宏基因组分析,这些温泉的温度范围在61至92摄氏度之间,pH值在1.8至7之间。对生物多样性和群落组成的比较通常表明,随着温度升高和pH值降低,生物多样性会减少。影响所研究地点微生物多样性的另一个重要因素是有机底物的丰度。检测到了嗜热栖热菌目的几个物种,而在所有样本中均未发现单一细菌物种,这表明某些古菌物种对不同嗜热环境具有更好的适应性。两个温泉中嗜酸氧化硫硫杆菌的丰度很高,这支持了存在一种能在超嗜热环境中茁壮成长的真正嗜热嗜酸氧化硫硫杆菌物种的观点。根据样本不同,高达58%的测序读数无法归类到已知门,这进一步证明了自然界中大量微生物,包括那些在高温环境中生存的微生物,仍有待分离和鉴定。

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