Suppr超能文献

真核生物核糖体mRNA募集的定量研究。

Quantitative studies of mRNA recruitment to the eukaryotic ribosome.

作者信息

Fraser Christopher S

机构信息

Department of Molecular and Cellular Biology, College of Biological Sciences, University of California, Davis, CA 95616, USA.

出版信息

Biochimie. 2015 Jul;114:58-71. doi: 10.1016/j.biochi.2015.02.017. Epub 2015 Mar 2.

Abstract

The process of peptide bond synthesis by ribosomes is conserved between species, but the initiation step differs greatly between the three kingdoms of life. This is illustrated by the evolution of roughly an order of magnitude more initiation factor mass found in humans compared with bacteria. Eukaryotic initiation of translation is comprised of a number of sub-steps: (i) recruitment of an mRNA and initiator methionyl-tRNA to the 40S ribosomal subunit; (ii) migration of the 40S subunit along the 5' UTR to locate the initiation codon; and (iii) recruitment of the 60S subunit to form the 80S initiation complex. Although the mechanism and regulation of initiation has been studied for decades, many aspects of the pathway remain unclear. In this review, I will focus discussion on what is known about the mechanism of mRNA selection and its recruitment to the 40S subunit. I will summarize how the 43S preinitiation complex (PIC) is formed and stabilized by interactions between its components. I will discuss what is known about the mechanism of mRNA selection by the eukaryotic initiation factor 4F (eIF4F) complex and how the selected mRNA is recruited to the 43S PIC. The regulation of this process by secondary structure located in the 5' UTR of an mRNA will also be discussed. Finally, I present a possible kinetic model with which to explain the process of mRNA selection and recruitment to the eukaryotic ribosome.

摘要

核糖体合成肽键的过程在物种间是保守的,但起始步骤在生命的三个王国之间有很大差异。这体现在与细菌相比,人类中发现的起始因子质量大约多了一个数量级的进化上。真核生物翻译起始由多个子步骤组成:(i)将mRNA和起始甲硫氨酰 - tRNA招募到40S核糖体亚基;(ii)40S亚基沿5'UTR迁移以定位起始密码子;(iii)招募60S亚基形成80S起始复合物。尽管起始的机制和调控已经研究了几十年,但该途径的许多方面仍不清楚。在这篇综述中,我将重点讨论关于mRNA选择机制及其招募到40S亚基的已知内容。我将总结43S预起始复合物(PIC)如何通过其组分之间的相互作用形成并稳定。我将讨论关于真核起始因子4F(eIF4F)复合物选择mRNA的机制以及所选mRNA如何招募到43S PIC的已知内容。还将讨论mRNA 5'UTR中的二级结构对该过程的调控。最后,我提出一个可能的动力学模型来解释mRNA选择和招募到真核核糖体的过程。

相似文献

1
Quantitative studies of mRNA recruitment to the eukaryotic ribosome.
Biochimie. 2015 Jul;114:58-71. doi: 10.1016/j.biochi.2015.02.017. Epub 2015 Mar 2.
2
A helicase-independent activity of eIF4A in promoting mRNA recruitment to the human ribosome.
Proc Natl Acad Sci U S A. 2017 Jun 13;114(24):6304-6309. doi: 10.1073/pnas.1620426114. Epub 2017 May 30.
4
An RNA trapping mechanism in Alphavirus mRNA promotes ribosome stalling and translation initiation.
Nucleic Acids Res. 2016 May 19;44(9):4368-80. doi: 10.1093/nar/gkw172. Epub 2016 Mar 16.
5
Regulation of GTP hydrolysis prior to ribosomal AUG selection during eukaryotic translation initiation.
EMBO J. 2005 Nov 2;24(21):3737-46. doi: 10.1038/sj.emboj.7600844. Epub 2005 Oct 13.
6
The structure of a human translation initiation complex reveals two independent roles for the helicase eIF4A.
Nat Struct Mol Biol. 2024 Mar;31(3):455-464. doi: 10.1038/s41594-023-01196-0. Epub 2024 Jan 29.
7
The molecular basis of translation initiation and its regulation in eukaryotes.
Nat Rev Mol Cell Biol. 2024 Mar;25(3):168-186. doi: 10.1038/s41580-023-00624-9. Epub 2023 Dec 5.
8
Evolution and the universality of the mechanism of initiation of protein synthesis.
Gene. 2009 Mar 1;432(1-2):1-6. doi: 10.1016/j.gene.2008.11.001. Epub 2008 Nov 8.
9
Structural Insights into the Mechanism of Scanning and Start Codon Recognition in Eukaryotic Translation Initiation.
Trends Biochem Sci. 2017 Aug;42(8):589-611. doi: 10.1016/j.tibs.2017.03.004. Epub 2017 Apr 22.
10
Rapid 40S scanning and its regulation by mRNA structure during eukaryotic translation initiation.
Cell. 2022 Nov 23;185(24):4474-4487.e17. doi: 10.1016/j.cell.2022.10.005. Epub 2022 Nov 4.

引用本文的文献

1
Dynamics and Regulation of mRNA Cap Recognition by Human eIF4F.
bioRxiv. 2025 Jun 27:2025.06.26.660926. doi: 10.1101/2025.06.26.660926.
2
Sortase-Mediated Fluorescent Labeling of eIF4E for Investigating Translation Initiation Mechanisms.
Biochemistry. 2025 Mar 4;64(5):1099-1108. doi: 10.1021/acs.biochem.4c00851. Epub 2025 Feb 19.
4
Structural diversity and biological role of the 5' untranslated regions of picornavirus.
RNA Biol. 2023 Jan;20(1):548-562. doi: 10.1080/15476286.2023.2240992.
5
Using mechanistic models and machine learning to design single-color multiplexed nascent chain tracking experiments.
Front Cell Dev Biol. 2023 May 30;11:1151318. doi: 10.3389/fcell.2023.1151318. eCollection 2023.
7
The alternative proteome in neurobiology.
Front Cell Neurosci. 2022 Nov 17;16:1019680. doi: 10.3389/fncel.2022.1019680. eCollection 2022.
8
mRNA- and factor-driven dynamic variability controls eIF4F-cap recognition for translation initiation.
Nucleic Acids Res. 2022 Aug 12;50(14):8240-8261. doi: 10.1093/nar/gkac631.
9
Global analysis of polysome-associated mRNA in vesicular stomatitis virus infected cells.
PLoS Pathog. 2019 Jun 21;15(6):e1007875. doi: 10.1371/journal.ppat.1007875. eCollection 2019 Jun.
10
Translation acrobatics: how cancer cells exploit alternate modes of translational initiation.
EMBO Rep. 2018 Oct;19(10). doi: 10.15252/embr.201845947. Epub 2018 Sep 17.

本文引用的文献

1
2
Folding of an intrinsically disordered protein by phosphorylation as a regulatory switch.
Nature. 2015 Mar 5;519(7541):106-9. doi: 10.1038/nature13999. Epub 2014 Dec 22.
3
Structural changes enable start codon recognition by the eukaryotic translation initiation complex.
Cell. 2014 Oct 23;159(3):597-607. doi: 10.1016/j.cell.2014.10.001. Epub 2014 Oct 16.
4
Human eukaryotic initiation factor 2 (eIF2)-GTP-Met-tRNAi ternary complex and eIF3 stabilize the 43 S preinitiation complex.
J Biol Chem. 2014 Nov 14;289(46):31827-31836. doi: 10.1074/jbc.M114.602870. Epub 2014 Sep 22.
6
Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex.
Cell. 2014 Aug 28;158(5):1123-1135. doi: 10.1016/j.cell.2014.07.044.
7
Ribosome recycling induces optimal translation rate at low ribosomal availability.
J R Soc Interface. 2014 Sep 6;11(98):20140589. doi: 10.1098/rsif.2014.0589.
8
Single-molecule kinetics of the eukaryotic initiation factor 4AI upon RNA unwinding.
Structure. 2014 Jul 8;22(7):941-8. doi: 10.1016/j.str.2014.04.014. Epub 2014 Jun 5.
9
Principles and properties of eukaryotic mRNPs.
Mol Cell. 2014 May 22;54(4):547-58. doi: 10.1016/j.molcel.2014.04.033.
10
eIF4B, eIF4G and RNA regulate eIF4A activity in translation initiation by modulating the eIF4A conformational cycle.
Nucleic Acids Res. 2014 Jul;42(12):7911-22. doi: 10.1093/nar/gku440. Epub 2014 May 21.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验