有机磷农药降解菌施氏假单胞菌 YC-YH1 的基因组序列
Genome Sequence of Organophosphorus Pesticide-Degrading Bacterium Pseudomonas stutzeri Strain YC-YH1.
作者信息
Shi Yan-Hua, Ren Lei, Jia Yang, Yan Yan-Chun
机构信息
Graduate School of Chinese Academy of Agricultural Sciences, Beijing, China.
Graduate School of Chinese Academy of Agricultural Sciences, Beijing, China
出版信息
Genome Announc. 2015 Mar 26;3(2):e00192-15. doi: 10.1128/genomeA.00192-15.
Abstract
Pseudomonas stutzeri strain YC-YH1, isolated from pesticide-polluted soil, efficiently degrades organophosphorus pesticides (OPPs) such as chlorpyrifos, parathion-methyl, triazophos, and parathion. Here, we report the genome sequence (4.83 Mb) of P. stutzeri YC-YH1 to facilitate further investigation of the OPP-degrading mechanism.
摘要
从农药污染土壤中分离得到的施氏假单胞菌菌株YC-YH1能高效降解毒死蜱、甲基对硫磷、三唑磷和对硫磷等有机磷农药（OPPs）。在此，我们报道施氏假单胞菌YC-YH1的基因组序列（4.83 Mb），以促进对有机磷农药降解机制的进一步研究。
相似文献
1
Genome Sequence of Organophosphorus Pesticide-Degrading Bacterium Pseudomonas stutzeri Strain YC-YH1.有机磷农药降解菌施氏假单胞菌 YC-YH1 的基因组序列
Genome Announc. 2015 Mar 26;3(2):e00192-15. doi: 10.1128/genomeA.00192-15.
2
Cloning of mpd gene from a chlorpyrifos-degrading bacterium and use of this strain in bioremediation of contaminated soil.从毒死蜱降解菌中克隆mpd基因及其在污染土壤生物修复中的应用。
FEMS Microbiol Lett. 2006 Dec;265(1):118-25. doi: 10.1111/j.1574-6968.2006.00478.x.
3
[Construction of a versatile degrading bacteria Pseudomonas putida KT2440-DOP and its degrading characteristics].[多功能降解菌恶臭假单胞菌KT2440-DOP的构建及其降解特性]
Wei Sheng Wu Xue Bao. 2006 Oct;46(5):763-6.
4
Isolation and characterization of organophosphorus phosphatases from MB497 capable of degrading Chlorpyrifos, Triazophos and Dimethoate.从MB497中分离并鉴定能够降解毒死蜱、三唑磷和乐果的有机磷磷酸酶。
Heliyon. 2020 Jul 1;6(7):e04221. doi: 10.1016/j.heliyon.2020.e04221. eCollection 2020 Jul.
5
Draft Genome Sequence of the Methyl Parathion (Pesticide) Degrading Bacterium Pseudomonas spp. MR3.甲基对硫磷（农药）降解菌 Pseudomonas spp. MR3 的基因组草图
Indian J Microbiol. 2014 Mar;54(1):120-1. doi: 10.1007/s12088-013-0433-9. Epub 2013 Oct 22.
6
Rapid biodegradation of organophosphorus pesticides by Stenotrophomonas sp. G1.斯氏假单胞菌 G1 对有机磷农药的快速生物降解。
J Hazard Mater. 2015 Oct 30;297:17-24. doi: 10.1016/j.jhazmat.2015.04.052. Epub 2015 Apr 20.
7
Chlorpyrifos inhibits nitrogen fixation in rice-vegetated soil containing Pseudomonas stutzeri A1501.毒死蜱抑制了含有施氏假单胞菌 A1501 的水稻植被土壤中的固氮作用。
Chemosphere. 2020 Oct;256:127098. doi: 10.1016/j.chemosphere.2020.127098. Epub 2020 May 18.
8
Isolation of a chlorpyrifos-degrading bacterium, Sphingomonas sp. strain Dsp-2, and cloning of the mpd gene.毒死蜱降解菌鞘氨醇单胞菌属菌株Dsp-2的分离及mpd基因的克隆
Res Microbiol. 2007 Mar;158(2):143-9. doi: 10.1016/j.resmic.2006.11.007. Epub 2007 Jan 8.
9
Diversity of organophosphorus pesticide-degrading bacteria in a polluted soil and conservation of their organophosphorus hydrolase genes.污染土壤中有机磷农药降解菌的多样性及其有机磷水解酶基因的保存
Can J Microbiol. 2005 Apr;51(4):337-43. doi: 10.1139/w05-010.
10
Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Pseudomonas stutzeri KF716 (NBRC 110668).多氯联苯降解菌施氏假单胞菌KF716（NBRC 110668）的基因组序列草图
Genome Announc. 2015 Oct 22;3(5):e01215-15. doi: 10.1128/genomeA.01215-15.
引用本文的文献
1
Comparative genomics of (): diversity, habitats, and biodegradation of aromatic compounds.（）的比较基因组学：芳香族化合物的多样性、栖息地及生物降解
Front Microbiol. 2023 May 15;14:1159176. doi: 10.3389/fmicb.2023.1159176. eCollection 2023.
2
Deciphering the recent trends in pesticide bioremediation using genome editing and multi-omics approaches: a review.利用基因组编辑和多组学方法解析农药生物修复的最新趋势：综述。
World J Microbiol Biotechnol. 2023 Apr 8;39(6):151. doi: 10.1007/s11274-023-03603-6.
3
Decolorization and biodegradation of textile di-azo dye Acid Blue 113 by AK6.AK6对纺织双偶氮染料酸性蓝113的脱色及生物降解作用
3 Biotech. 2020 May;10(5):214. doi: 10.1007/s13205-020-02205-5. Epub 2020 Apr 25.
4
Omics Approaches to Pesticide Biodegradation.组学方法在农药生物降解中的应用。
Curr Microbiol. 2020 Apr;77(4):545-563. doi: 10.1007/s00284-020-01916-5. Epub 2020 Feb 20.
5
Assessment of genetic diversity and bioremediation potential of pseudomonads isolated from pesticide-contaminated artichoke farm soils.从受农药污染的洋蓟农场土壤中分离出的假单胞菌的遗传多样性和生物修复潜力评估。
3 Biotech. 2018 Jun;8(6):263. doi: 10.1007/s13205-018-1256-5. Epub 2018 May 19.
6
Non-pathogenic microflora of a spring water with regenerative properties.具有再生特性的矿泉水中的非致病微生物群落。
Biomed Rep. 2015 Nov;3(6):758-762. doi: 10.3892/br.2015.507. Epub 2015 Aug 24.
7
Draft Genome Sequence of the Toluene-Degrading Pseudomonas stutzeri Strain ST-9.甲苯降解施氏假单胞菌ST-9菌株的基因组序列草图
Genome Announc. 2015 Jun 4;3(3):e00567-15. doi: 10.1128/genomeA.00567-15.
本文引用的文献
1
Draft Genome Sequence of the Organophosphorus Compound-Degrading Burkholderia zhejiangensis Strain CEIB S4-3.有机磷化合物降解菌浙江伯克霍尔德氏菌CEIB S4-3的基因组序列草图
Genome Announc. 2014 Dec 18;2(6):e01323-14. doi: 10.1128/genomeA.01323-14.
2
Draft Genome Sequence of the Organophosphorus-Degrading Bacterium Pseudomonas sp. Strain 1-7, Isolated from Organophosphorus-Polluted Sludge.从有机磷污染污泥中分离出的有机磷降解细菌假单胞菌属菌株1-7的基因组序列草图
Genome Announc. 2014 Oct 2;2(5):e00993-14. doi: 10.1128/genomeA.00993-14.
3
Draft Genome Sequence of Burkholderia sp. Strain MP-1, a Methyl Parathion (MP)-Degrading Bacterium from MP-Contaminated Soil.甲基对硫磷（MP）污染土壤中甲基对硫磷降解菌伯克霍尔德氏菌MP-1菌株的基因组序列草图
Genome Announc. 2014 May 22;2(3):e00344-14. doi: 10.1128/genomeA.00344-14.
4
Evaluating pesticide degradation in the environment: blind spots and emerging opportunities.评估环境中农药的降解：盲点与新兴机遇。
Science. 2013 Aug 16;341(6147):752-8. doi: 10.1126/science.1236281.
5
Organophosphorus-degrading bacteria: ecology and industrial applications.有机磷降解细菌：生态学与工业应用
Nat Rev Microbiol. 2009 Feb;7(2):156-64. doi: 10.1038/nrmicro2050. Epub 2008 Dec 22.
6
SOAP: short oligonucleotide alignment program.SOAP：短寡核苷酸比对程序。
Bioinformatics. 2008 Mar 1;24(5):713-4. doi: 10.1093/bioinformatics/btn025. Epub 2008 Jan 28.
7
KEGG: kyoto encyclopedia of genes and genomes.京都基因与基因组百科全书（KEGG）
Nucleic Acids Res. 2000 Jan 1;28(1):27-30. doi: 10.1093/nar/28.1.27.
8
Tandem repeats finder: a program to analyze DNA sequences.串联重复序列查找器：一个用于分析DNA序列的程序。
Nucleic Acids Res. 1999 Jan 15;27(2):573-80. doi: 10.1093/nar/27.2.573.
Zotero 插件