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用于刚体动力学的新型朗之万和梯度恒温器。

New Langevin and gradient thermostats for rigid body dynamics.

作者信息

Davidchack R L, Ouldridge T E, Tretyakov M V

机构信息

Department of Mathematics, University of Leicester, Leicester LE1 7RH, United Kingdom.

Department of Mathematics, Imperial College, London SW7 2AZ, United Kingdom.

出版信息

J Chem Phys. 2015 Apr 14;142(14):144114. doi: 10.1063/1.4916312.

Abstract

We introduce two new thermostats, one of Langevin type and one of gradient (Brownian) type, for rigid body dynamics. We formulate rotation using the quaternion representation of angular coordinates; both thermostats preserve the unit length of quaternions. The Langevin thermostat also ensures that the conjugate angular momenta stay within the tangent space of the quaternion coordinates, as required by the Hamiltonian dynamics of rigid bodies. We have constructed three geometric numerical integrators for the Langevin thermostat and one for the gradient thermostat. The numerical integrators reflect key properties of the thermostats themselves. Namely, they all preserve the unit length of quaternions, automatically, without the need of a projection onto the unit sphere. The Langevin integrators also ensure that the angular momenta remain within the tangent space of the quaternion coordinates. The Langevin integrators are quasi-symplectic and of weak order two. The numerical method for the gradient thermostat is of weak order one. Its construction exploits ideas of Lie-group type integrators for differential equations on manifolds. We numerically compare the discretization errors of the Langevin integrators, as well as the efficiency of the gradient integrator compared to the Langevin ones when used in the simulation of rigid TIP4P water model with smoothly truncated electrostatic interactions. We observe that the gradient integrator is computationally less efficient than the Langevin integrators. We also compare the relative accuracy of the Langevin integrators in evaluating various static quantities and give recommendations as to the choice of an appropriate integrator.

摘要

我们为刚体动力学引入了两种新型恒温器,一种是朗之万型,另一种是梯度(布朗)型。我们使用角坐标的四元数表示来表述旋转;两种恒温器都保持四元数的单位长度。朗之万恒温器还确保共轭角动量如刚体哈密顿动力学所要求的那样,保持在四元数坐标的切空间内。我们为朗之万恒温器构建了三种几何数值积分器,为梯度恒温器构建了一种。这些数值积分器反映了恒温器本身的关键特性。具体而言,它们都自动保持四元数的单位长度,无需投影到单位球面上。朗之万积分器还确保角动量保持在四元数坐标的切空间内。朗之万积分器是拟辛的,弱阶为二。梯度恒温器的数值方法弱阶为一。其构建利用了流形上微分方程的李群型积分器的思想。我们在具有平滑截断静电相互作用的刚性TIP4P水模型模拟中,数值比较了朗之万积分器的离散化误差,以及梯度积分器与朗之万积分器相比的效率。我们观察到梯度积分器在计算上比朗之万积分器效率低。我们还比较了朗之万积分器在评估各种静态量时的相对精度,并就选择合适的积分器给出建议。

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