人工栽培牛肝菌红绒盖牛肝菌菌株PP33的基因组序列
Genome Sequence of Phlebopus portentosus Strain PP33, a Cultivated Bolete.
作者信息
Cao Yang, Zhang Ying, Yu Zefen, Wang Pengfei, Tang Xiaozhao, He Xiaoxia, Mi Fei, Liu Chunli, Yang Dan, Xu Jianping
机构信息
Laboratory for Conservation and Utilization of Bio-Resources and Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming, Yunnan, China.
出版信息
Genome Announc. 2015 Apr 23;3(2):e00326-15. doi: 10.1128/genomeA.00326-15.
Abstract
Phlebopus portentosus can form fruiting bodies, both independently as a saprophyte and in association with plants as an ectomycorrhizal symbiont. It thus offers an excellent model from which to examine the genetic basis of lifestyle adaptations and transitions for mushrooms. This paper reports the genome sequence of a homokaryotic strain of P. portentosus, PP33.
摘要
高大环柄菇既可以作为腐生菌独立形成子实体，也可以作为外生菌根共生体与植物共生形成子实体。因此，它为研究蘑菇生活方式适应与转变的遗传基础提供了一个绝佳的模型。本文报道了高大环柄菇同核体菌株PP33的基因组序列。
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本文引用的文献
1
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.SOAPdenovo2：一种经验丰富的、内存效率高的短读长从头组装器。
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
2
Rfam 11.0: 10 years of RNA families.RFAM 11.0：10 年的 RNA 家族。
Nucleic Acids Res. 2013 Jan;41(Database issue):D226-32. doi: 10.1093/nar/gks1005. Epub 2012 Nov 3.
3
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche.双孢蘑菇基因组序列揭示了控制其适应富含腐殖质生态位的机制。
Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17501-6. doi: 10.1073/pnas.1206847109. Epub 2012 Oct 8.
4
dbCAN: a web resource for automated carbohydrate-active enzyme annotation.dbCAN：一个用于自动化碳水化合物活性酶注释的网络资源。
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W445-51. doi: 10.1093/nar/gks479. Epub 2012 May 29.
5
Using RepeatMasker to identify repetitive elements in genomic sequences.使用RepeatMasker来识别基因组序列中的重复元件。
Curr Protoc Bioinformatics. 2009 Mar;Chapter 4:4.10.1-4.10.14. doi: 10.1002/0471250953.bi0410s25.
6
Using geneid to identify genes.使用基因识别号来识别基因。
Curr Protoc Bioinformatics. 2007 Jun;Chapter 4:Unit 4.3. doi: 10.1002/0471250953.bi0403s18.
7
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.使用 EVidenceModeler 和 Program to Assemble Spliced Alignments 进行自动化真核基因结构注释。
Genome Biol. 2008 Jan 11;9(1):R7. doi: 10.1186/gb-2008-9-1-r7.
8
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints.奥古斯塔斯：一个用于真核生物基因预测的网络服务器，允许用户定义约束条件。
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W465-7. doi: 10.1093/nar/gki458.
9
GeneWise and Genomewise.基因比对软件GeneWise和基因组比对软件Genomewise
Genome Res. 2004 May;14(5):988-95. doi: 10.1101/gr.1865504.
10
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE：用于改进基因组序列中转运RNA基因检测的程序。
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
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