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生物催化控制自由基氨基酸卤化酶的反应选择性和链长选择性。

Biocatalytic control of site-selectivity and chain length-selectivity in radical amino acid halogenases.

机构信息

Department of Chemistry, University of California, Berkeley, CA 94720.

Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720.

出版信息

Proc Natl Acad Sci U S A. 2023 Mar 21;120(12):e2214512120. doi: 10.1073/pnas.2214512120. Epub 2023 Mar 13.

Abstract

Biocatalytic C-H activation has the potential to merge enzymatic and synthetic strategies for bond formation. Fe/αKG-dependent halogenases are particularly distinguished for their ability both to control selective C-H activation as well as to direct group transfer of a bound anion along a reaction axis separate from oxygen rebound, enabling the development of new transformations. In this context, we elucidate the basis for the selectivity of enzymes that perform selective halogenation to yield 4-Cl-lysine (BesD), 5-Cl-lysine (HalB), and 4-Cl-ornithine (HalD), allowing us to probe how site-selectivity and chain length selectivity are achieved. We now report the crystal structure of the HalB and HalD, revealing the key role of the substrate-binding lid in positioning the substrate for C vs C chlorination and recognition of lysine vs ornithine. Targeted engineering of the substrate-binding lid further demonstrates that these selectivities can be altered or switched, showcasing the potential to develop halogenases for biocatalytic applications.

摘要

生物催化 C-H 活化有可能将酶和合成策略结合起来用于键的形成。Fe/αKG 依赖性卤化酶特别突出的特点是既能控制选择性 C-H 活化,又能将结合的阴离子沿着与氧回弹分开的反应轴定向转移基团,从而实现新的转化。在这种情况下,我们阐明了进行选择性卤化以生成 4-Cl-赖氨酸(BesD)、5-Cl-赖氨酸(HalB)和 4-Cl-鸟氨酸(HalD)的酶的选择性的基础,使我们能够探究如何实现位点选择性和链长选择性。我们现在报告了 HalB 和 HalD 的晶体结构,揭示了底物结合盖在定位 C 与 C 氯化和赖氨酸与鸟氨酸识别中的关键作用。对底物结合盖的靶向工程进一步表明,这些选择性可以改变或切换,展示了为生物催化应用开发卤化酶的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e12a/10041140/674cfecaf487/pnas.2214512120fig01.jpg

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