Hendrickson Phillip J, Yu Gene J, Song Dong, Berger Theodore W
IEEE Trans Biomed Eng. 2016 Jan;63(1):199-209. doi: 10.1109/TBME.2015.2445771. Epub 2015 Jun 16.
This paper describes a million-plus granule cell compartmental model of the rat hippocampal dentate gyrus, including excitatory, perforant path input from the entorhinal cortex, and feedforward and feedback inhibitory input from dentate interneurons.
The model includes experimentally determined morphological and biophysical properties of granule cells, together with glutamatergic AMPA-like EPSP and GABAergic GABAA-like IPSP synaptic excitatory and inhibitory inputs, respectively. Each granule cell was composed of approximately 200 compartments having passive and active conductances distributed throughout the somatic and dendritic regions. Modeling excitatory input from the entorhinal cortex was guided by axonal transport studies documenting the topographical organization of projections from subregions of the medial and lateral entorhinal cortex, plus other important details of the distribution of glutamatergic inputs to the dentate gyrus. Information contained within previously published maps of this major hippocampal afferent were systematically converted to scales that allowed the topographical distribution and relative synaptic densities of perforant path inputs to be quantitatively estimated for inclusion in the current model.
Results showed that when medial and lateral entorhinal cortical neurons maintained Poisson random firing, dentate granule cells expressed, throughout the million-cell network, a robust nonrandom pattern of spiking best described as a spatiotemporal "clustering." To identify the network property or properties responsible for generating such firing "clusters," we progressively eliminated from the model key mechanisms, such as feedforward and feedback inhibition, intrinsic membrane properties underlying rhythmic burst firing, and/or topographical organization of entorhinal afferents.
Findings conclusively identified topographical organization of inputs as the key element responsible for generating a spatiotemporal distribution of clustered firing. These results uncover a functional organization of perforant path afferents to the dentate gyrus not previously recognized: topography-dependent clusters of granule cell activity as "functional units" or "channels" that organize the processing of entorhinal signals. This modeling study also reveals for the first time how a global signal processing feature of a neural network can evolve from one of its underlying structural characteristics.
本文描述了一个包含一百多万个颗粒细胞的大鼠海马齿状回的 compartmental 模型,包括来自内嗅皮质的兴奋性穿通通路输入,以及来自齿状回中间神经元的前馈和反馈抑制性输入。
该模型包括通过实验确定的颗粒细胞的形态和生物物理特性,以及分别为谷氨酸能的AMPA样兴奋性突触后电位(EPSP)和GABA能的GABAA样抑制性突触后电位(IPSP)的突触兴奋性和抑制性输入。每个颗粒细胞由大约200个隔室组成,这些隔室具有分布在胞体和树突区域的被动和主动电导。对内嗅皮质兴奋性输入的建模是基于轴突运输研究,这些研究记录了内侧和外侧内嗅皮质亚区域投射的拓扑组织,以及谷氨酸能输入到齿状回分布的其他重要细节。先前发表的关于这个主要海马传入神经的图谱中包含的信息被系统地转换为尺度,以便能够定量估计穿通通路输入的拓扑分布和相对突触密度,从而纳入当前模型。
结果表明,当内侧和外侧内嗅皮质神经元保持泊松随机发放时,在整个百万细胞网络中,齿状颗粒细胞表现出一种强烈的非随机发放模式,最好将其描述为一种时空“聚类”。为了确定负责产生这种发放“簇”的一个或多个网络特性,我们逐步从模型中消除关键机制,如前馈和反馈抑制、节律性爆发发放背后的内在膜特性,和/或内嗅传入神经的拓扑组织。
研究结果最终确定输入的拓扑组织是产生聚类发放时空分布的关键因素。这些结果揭示了以前未被认识的齿状回穿通通路传入神经的功能组织:颗粒细胞活动的拓扑依赖簇作为“功能单元”或“通道”,组织内嗅信号的处理。这项建模研究还首次揭示了神经网络的一个全局信号处理特征如何从其潜在的结构特征之一演变而来。