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利用声波进行智能DNA构建:将声学分配技术应用于合成生物学

Smart DNA Fabrication Using Sound Waves: Applying Acoustic Dispensing Technologies to Synthetic Biology.

作者信息

Kanigowska Paulina, Shen Yue, Zheng Yijing, Rosser Susan, Cai Yizhi

机构信息

School of Biological Sciences, University of Edinburgh, The King's Buildings, Edinburgh, UK.

School of Biological Sciences, University of Edinburgh, The King's Buildings, Edinburgh, UK BGI-Shenzhen, Shenzhen, China.

出版信息

J Lab Autom. 2016 Feb;21(1):49-56. doi: 10.1177/2211068215593754. Epub 2015 Jul 10.

Abstract

Acoustic droplet ejection (ADE) technology uses focused acoustic energy to transfer nanoliter-scale liquid droplets with high precision and accuracy. This noncontact, tipless, low-volume dispensing technology minimizes the possibility of cross-contamination and potentially reduces the costs of reagents and consumables. To date, acoustic dispensers have mainly been used in screening libraries of compounds. In this paper, we describe the first application of this powerful technology to the rapidly developing field of synthetic biology, for DNA synthesis and assembly at the nanoliter scale using a Labcyte Echo 550 acoustic dispenser. We were able to successfully downscale PCRs and the popular one-pot DNA assembly methods, Golden Gate and Gibson assemblies, from the microliter to the nanoliter scale with high assembly efficiency, which effectively cut the reagent cost by 20- to 100-fold. We envision that acoustic dispensing will become an instrumental technology in synthetic biology, in particular in the era of DNA foundries.

摘要

声滴喷射(ADE)技术利用聚焦声能高精度、准确地转移纳升规模的液滴。这种非接触、无针、低体积的分配技术将交叉污染的可能性降至最低,并有可能降低试剂和耗材成本。迄今为止,声控分配器主要用于化合物筛选文库。在本文中,我们描述了这项强大技术在合成生物学快速发展领域的首次应用,即使用Labcyte Echo 550声控分配器在纳升规模上进行DNA合成和组装。我们能够成功地将聚合酶链式反应(PCR)以及流行的一锅法DNA组装方法——金门组装法和吉布森组装法从微升规模缩小到纳升规模,且组装效率很高,这有效地将试剂成本降低了20至100倍。我们设想,声控分配将成为合成生物学中的一项重要技术,尤其是在DNA铸造厂时代。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc2a/4814025/69d46cf8db60/10.1177_2211068215593754-fig1.jpg

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