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从发酵豆酱中分离出的新种迟缓芽孢杆菌。

Bacillus paralicheniformis sp. nov., isolated from fermented soybean paste.

作者信息

Dunlap Christopher A, Kwon Soon-Wo, Rooney Alejandro P, Kim Soo-Jin

机构信息

Crop Bioprotection Research Unit, National Center for Agricultural Utilization Research, Agricultural Research Service, United States Department of Agriculture, Peoria, IL, USA.

Korean Agriculture Culture Collection (KACC), Agricultural Microbiology Division, National Academy of Agricultural Science, Rural Development Administration, Wanju-gun, Jeollabuk-do, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2015 Oct;65(10):3487-3492. doi: 10.1099/ijsem.0.000441.

Abstract

An isolate of a Gram-stain-positive, facultatively anaerobic, motile, rod-shaped, endospore-forming bacterium was recovered from soybean-based fermented paste. Phylogenetic analysis of the 16S rRNA gene indicated that the strain was most closely related to Bacillus sonorensis KCTC-13918T (99.5 % similarity) and Bacillus licheniformis DSM 13T (99.4 %). In phenotypic characterization, the novel strain was found to grow at 15–60 °C and to tolerate up to 10 % (w/v) NaCl. Furthermore, the strain grew in media with pH 6–11 (optimal growth at pH 7.0–8.0). The predominant cellular fatty acids were anteiso-C15 : 0 (37.7 %) and iso-C15 : 0 (31.5 %). The predominant isoprenoid quinone was menaquinone 7 (MK-7). The cell-wall peptidoglycan contained meso-diaminopimelic acid. A draft genome sequence of the strain was completed and used for phylogenetic analysis. Phylogenomic analysis of all published genomes of species in the B. licheniformis group revealed that strains belonging to B. licheniformis clustered into two distinct groups, with group 1 consisting of B. licheniformis DSM 13T and 11 other strains and group 2 consisting of KJ-16T and four other strains. The DNA G+C content of strain KJ-16T was 45.9 % (determined from the genome sequence). Strain KJ-16T and another strain from group 2 were subsequently characterized using a polyphasic taxonomic approach and compared with strains from group 1 and another closely related species of the genus Bacillus. Based upon the consensus of phylogenetic and phenotypic analyses, we conclude that this strain represents a novel species within the genus Bacillus, for which the name Bacillus paralicheniformis sp. nov. is proposed, with type strain KJ-16T ( = KACC 18426T = NRRL B-65293T).

摘要

从大豆发酵酱中分离出一株革兰氏阳性、兼性厌氧、具运动性、杆状、产芽孢的细菌。对其16S rRNA基因进行系统发育分析表明,该菌株与索诺拉芽孢杆菌KCTC - 13918T(相似度99.5%)和地衣芽孢杆菌DSM 13T(相似度99.4%)关系最为密切。在表型特征方面,发现该新菌株能在15 - 60°C生长,耐受高达10%(w/v)的NaCl。此外,该菌株能在pH值为6 - 11的培养基中生长(最适生长pH值为7.0 - 8.0)。主要的细胞脂肪酸为anteiso - C15 : 0(37.7%)和iso - C15 : 0(31.5%)。主要的类异戊二烯醌为甲基萘醌7(MK - 7)。细胞壁肽聚糖含有内消旋二氨基庚二酸。完成了该菌株的基因组草图序列测定并用于系统发育分析。对地衣芽孢杆菌组所有已发表物种的基因组进行系统基因组分析发现,属于地衣芽孢杆菌的菌株聚为两个不同的组,第1组由地衣芽孢杆菌DSM 13T和其他11个菌株组成,第2组由KJ - 16T和其他4个菌株组成。菌株KJ - 16T的DNA G + C含量为45.9%(根据基因组序列测定)。随后,采用多相分类方法对菌株KJ - 16T和第2组的另一个菌株进行了特征描述,并与第1组的菌株以及芽孢杆菌属的另一个近缘物种进行了比较。基于系统发育和表型分析的共识,我们得出结论,该菌株代表芽孢杆菌属内的一个新物种,为此提出名为解淀粉芽孢杆菌新种(Bacillus paralicheniformis sp. nov.),模式菌株为KJ - 16T(= KACC 18426T = NRRL B - 65293T)。

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