Velankar Sameer, Alhroub Younes, Alili Anaëlle, Best Christoph, Boutselakis Harry C, Caboche Ségolène, Conroy Matthew J, Dana Jose M, van Ginkel Glen, Golovin Adel, Gore Swanand P, Gutmanas Aleksandras, Haslam Pauline, Hirshberg Miriam, John Melford, Lagerstedt Ingvar, Mir Saqib, Newman Laurence E, Oldfield Tom J, Penkett Chris J, Pineda-Castillo Jorge, Rinaldi Luana, Sahni Gaurav, Sawka Grégoire, Sen Sanchayita, Slowley Robert, Sousa da Silva Alan Wilter, Suarez-Uruena Antonio, Swaminathan G Jawahar, Symmons Martyn F, Vranken Wim F, Wainwright Michael, Kleywegt Gerard J
Protein Data Bank in Europe, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Nucleic Acids Res. 2011 Jan;39(Database issue):D402-10. doi: 10.1093/nar/gkq985. Epub 2010 Nov 2.
The Protein Data Bank in Europe (PDBe; pdbe.org) is actively involved in managing the international archive of biomacromolecular structure data as one of the partners in the Worldwide Protein Data Bank (wwPDB; wwpdb.org). PDBe also develops new tools to make structural data more widely and more easily available to the biomedical community. PDBe has developed a browser to access and analyze the structural archive using classification systems that are familiar to chemists and biologists. The PDBe web pages that describe individual PDB entries have been enhanced through the introduction of plain-English summary pages and iconic representations of the contents of an entry (PDBprints). In addition, the information available for structures determined by means of NMR spectroscopy has been expanded. Finally, the entire web site has been redesigned to make it substantially easier to use for expert and novice users alike. PDBe works closely with other teams at the European Bioinformatics Institute (EBI) and in the international scientific community to develop new resources with value-added information. The SIFTS initiative is an example of such a collaboration--it provides extensive mapping data between proteins whose structures are available from the PDB and a host of other biomedical databases. SIFTS is widely used by major bioinformatics resources.
欧洲蛋白质数据库(PDBe;pdbe.org)作为全球蛋白质数据库(wwPDB;wwpdb.org)的合作伙伴之一,积极参与管理生物大分子结构数据的国际存档。PDBe还开发新工具,以使结构数据能更广泛、更便捷地提供给生物医学界。PDBe开发了一种浏览器,利用化学家和生物学家熟悉的分类系统来访问和分析结构存档。通过引入通俗易懂的摘要页面和条目的内容图标表示(PDBprints),描述单个PDB条目的PDBe网页得到了改进。此外,通过核磁共振光谱法确定的结构的可用信息也有所扩展。最后,整个网站进行了重新设计,使其对于专业用户和新手用户来说都更加易于使用。PDBe与欧洲生物信息学研究所(EBI)的其他团队以及国际科学界密切合作,开发具有增值信息的新资源。SIFTS计划就是这样一个合作的例子——它提供了结构可从PDB获取的蛋白质与许多其他生物医学数据库之间的广泛映射数据。SIFTS被主要的生物信息学资源广泛使用。