Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno-Bohunice, Czech Republic.
Nucleic Acids Res. 2020 Jan 8;48(D1):D335-D343. doi: 10.1093/nar/gkz990.
The Protein Data Bank in Europe (PDBe), a founding member of the Worldwide Protein Data Bank (wwPDB), actively participates in the deposition, curation, validation, archiving and dissemination of macromolecular structure data. PDBe supports diverse research communities in their use of macromolecular structures by enriching the PDB data and by providing advanced tools and services for effective data access, visualization and analysis. This paper details the enrichment of data at PDBe, including mapping of RNA structures to Rfam, and identification of molecules that act as cofactors. PDBe has developed an advanced search facility with ∼100 data categories and sequence searches. New features have been included in the LiteMol viewer at PDBe, with updated visualization of carbohydrates and nucleic acids. Small molecules are now mapped more extensively to external databases and their visual representation has been enhanced. These advances help users to more easily find and interpret macromolecular structure data in order to solve scientific problems.
欧洲蛋白质数据库（PDBe）是全球蛋白质数据库（wwPDB）的创始成员之一，积极参与大分子结构数据的提交、管理、验证、存档和传播。PDBe 通过丰富 PDB 数据并提供高级工具和服务以实现有效数据访问、可视化和分析，为各种研究群体使用大分子结构提供支持。本文详细介绍了 PDBe 数据的丰富内容，包括将 RNA 结构映射到 Rfam，以及鉴定作为辅因子的分子。PDBe 开发了一个具有约 100 个数据类别和序列搜索的高级搜索工具。在 PDBe 的 LiteMol 查看器中增加了新功能，更新了碳水化合物和核酸的可视化效果。小分子现在可以更广泛地映射到外部数据库，并增强了其可视化表示。这些进展有助于用户更轻松地查找和解释大分子结构数据，以解决科学问题。
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