动脉炎病毒科套式病毒目病毒的重组与扩展

Reorganization and expansion of the nidoviral family Arteriviridae.

作者信息

Kuhn Jens H, Lauck Michael, Bailey Adam L, Shchetinin Alexey M, Vishnevskaya Tatyana V, Bào Yīmíng, Ng Terry Fei Fan, LeBreton Matthew, Schneider Bradley S, Gillis Amethyst, Tamoufe Ubald, Diffo Joseph Le Doux, Takuo Jean Michel, Kondov Nikola O, Coffey Lark L, Wolfe Nathan D, Delwart Eric, Clawson Anna N, Postnikova Elena, Bollinger Laura, Lackemeyer Matthew G, Radoshitzky Sheli R, Palacios Gustavo, Wada Jiro, Shevtsova Zinaida V, Jahrling Peter B, Lapin Boris A, Deriabin Petr G, Dunowska Magdalena, Alkhovsky Sergey V, Rogers Jeffrey, Friedrich Thomas C, O'Connor David H, Goldberg Tony L

机构信息

Integrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 21702, USA.

Wisconsin National Primate Research Center, Madison, WI, 53715, USA.

出版信息

Arch Virol. 2016 Mar;161(3):755-68. doi: 10.1007/s00705-015-2672-z. Epub 2015 Nov 25.

Abstract

The family Arteriviridae presently includes a single genus Arterivirus. This genus includes four species as the taxonomic homes for equine arteritis virus (EAV), lactate dehydrogenase-elevating virus (LDV), porcine respiratory and reproductive syndrome virus (PRRSV), and simian hemorrhagic fever virus (SHFV), respectively. A revision of this classification is urgently needed to accommodate the recent description of eleven highly divergent simian arteriviruses in diverse African nonhuman primates, one novel arterivirus in an African forest giant pouched rat, and a novel arterivirus in common brushtails in New Zealand. In addition, the current arterivirus nomenclature is not in accordance with the most recent version of the International Code of Virus Classification and Nomenclature. Here we outline an updated, amended, and improved arterivirus taxonomy based on current data. Taxon-specific sequence cut-offs are established relying on a newly established open reading frame 1b phylogeny and pairwise sequence comparison (PASC) of coding-complete arterivirus genomes. As a result, the current genus Arterivirus is replaced by five genera: Equartevirus (for EAV), Rodartevirus (LDV + PRRSV), Simartevirus (SHFV + simian arteriviruses), Nesartevirus (for the arterivirus from forest giant pouched rats), and Dipartevirus (common brushtail arterivirus). The current species Porcine reproductive and respiratory syndrome virus is divided into two species to accommodate the clear divergence of the European and American "types" of PRRSV, both of which now receive virus status. The current species Simian hemorrhagic fever virus is divided into nine species to accommodate the twelve known simian arteriviruses. Non-Latinized binomial species names are introduced to replace all current species names to clearly differentiate them from virus names, which remain largely unchanged.

摘要

动脉炎病毒科目前仅包含一个动脉炎病毒属。该属包括四个种,分别作为马动脉炎病毒(EAV)、乳酸脱氢酶升高病毒(LDV)、猪繁殖与呼吸综合征病毒(PRRSV)和猴出血热病毒(SHFV)的分类归属。迫切需要对这一分类进行修订,以纳入最近在不同非洲非人灵长类动物中发现的11种高度不同的猴动脉炎病毒、一种来自非洲森林巨袋鼩的新型动脉炎病毒以及新西兰普通刷尾负鼠中的一种新型动脉炎病毒。此外,当前的动脉炎病毒命名法与最新版的《国际病毒分类和命名准则》不一致。在此,我们根据现有数据概述了一个更新、修正和改进的动脉炎病毒分类法。基于新建立的开放阅读框1b系统发育和编码完整的动脉炎病毒基因组的成对序列比较(PASC),确定了特定分类单元的序列阈值。结果,当前的动脉炎病毒属被五个属取代:马动脉炎病毒属(用于EAV)、啮齿动物动脉炎病毒属(LDV + PRRSV)、猴动脉炎病毒属(SHFV + 猴动脉炎病毒)、袋鼩动脉炎病毒属(用于来自森林巨袋鼩的动脉炎病毒)和双动脉炎病毒属(普通刷尾负鼠动脉炎病毒)。当前的猪繁殖与呼吸综合征病毒种被分为两个种,以适应欧洲和美洲“型”PRRSV的明显差异,这两种现在都获得了病毒地位。当前的猴出血热病毒种被分为九个种,以适应12种已知的猴动脉炎病毒。引入非拉丁化的双名种名以取代所有当前的种名,以便将它们与病毒名清楚地区分开来,病毒名在很大程度上保持不变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eb70/7087239/b88d0d3de709/705_2015_2672_Fig1_HTML.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索