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从盐矿分离出的极端嗜盐古菌盐沼盐杆菌KCY07-B2(T)的基因组序列草图

Draft genome sequence of Halopiger salifodinae KCY07-B2(T), an extremly halophilic archaeon isolated from a salt mine.

作者信息

Zhang Wei-Yan, Hu Jing, Pan Jie, Sun Cong, Wu Min, Xu Xue-Wei

机构信息

College of Life Sciences, Zhejiang University, Hangzhou, 310058 P. R. China.

Second Institute of Oceanography, State Oceanic Administration, Hangzhou, 310012 P. R. China.

出版信息

Stand Genomic Sci. 2015 Dec 10;10:124. doi: 10.1186/s40793-015-0113-y. eCollection 2015.

DOI:10.1186/s40793-015-0113-y
PMID:26664653
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4675023/
Abstract

Halopiger salifodinae strain KCY07-B2(T), isolated from a salt mine in Kuche county, Xinjiang province, China, belongs to the family Halobacteriaceae. It is a strictly aerobic, pleomorphic, rod-shaped, Gram-negative and extremely halophilic archaeon. In this work, we report the features of the type strain KCY07-B2(T), together with the draft genome sequence and annotation. The draft genome sequence is composed of 83 contigs for 4,350,718 bp with 65.41 % G + C content and contains 4204 protein-coding genes and 50 rRNA genes.

摘要

盐沼盐杆菌属菌株KCY07-B2(T),从中国新疆库车县的一个盐矿中分离得到,属于盐杆菌科。它是一种严格需氧、多形态、杆状、革兰氏阴性且极端嗜盐的古菌。在本研究中,我们报告了模式菌株KCY07-B2(T)的特征,以及草图基因组序列和注释。草图基因组序列由83个重叠群组成,长度为4,350,718 bp,G+C含量为65.41%,包含4204个蛋白质编码基因和50个rRNA基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98cc/4675023/28942746ccc1/40793_2015_113_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98cc/4675023/7d3915fb428a/40793_2015_113_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98cc/4675023/28942746ccc1/40793_2015_113_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98cc/4675023/7d3915fb428a/40793_2015_113_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98cc/4675023/28942746ccc1/40793_2015_113_Fig2_HTML.jpg

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本文引用的文献

1
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Halopiger salifodinae sp. nov., an extremely halophilic archaeon isolated from a salt mine.盐菌科盐生古菌新种,一种从盐矿中分离出的极端嗜盐古菌。
Int J Syst Evol Microbiol. 2013 Oct;63(Pt 10):3563-3567. doi: 10.1099/ijs.0.050971-0. Epub 2013 Apr 5.
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Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)).
哈氏嗜盐古菌模式菌株(SH-6(T))的全基因组序列
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