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对于突触建模(校准和基准测试)而言,沃尔泰拉泛函级数是动力学模型的一个可行替代方案。

The volterra functional series is a viable alternative to kinetic models for synaptic modeling--calibration and benchmarking.

作者信息

Hu Eric Y, Bouteiller Jean-Marie C, Song Dong, Berger Theodore W

出版信息

Annu Int Conf IEEE Eng Med Biol Soc. 2015;2015:3291-4. doi: 10.1109/EMBC.2015.7319095.

Abstract

Synaptic transmission is governed by a series of complex and highly nonlinear mechanisms and pathways in which the dynamics have a profound influence on the overall signal sent to the postsynaptic cell. In simulation, these mechanisms are often represented through kinetic models governed by state variables and rate law equations. Calculations of such ordinary differential equations (ODEs) in kinetic models can be computationally intensive, and although algorithms have been optimally developed to handle ODEs efficiently, simulation of numerous, large and complex kinetic models requires a prohibitively large amount of computational power. Here we present an alternative representation of ionotropic glutamatergic receptors AMPAr and NMDAr kinetic models consisting of input-output surrogates of the receptor models which can capture the nonlinear dynamics seen in the kinetic models. We benchmark this Input-Output (IO) synapse model and compare it with kinetic receptor models to evaluate the simulation time required when using either synapse model, as well as the number of time steps each model needs for simulation. While remaining faithful to the original dynamics of the model, our results indicate that the IO synapse model requires less simulation time than the kinetic models under conditions which elicit normal physiological responses, thereby improving computational efficiency while preserving the complex non-linear dynamics of the receptors. These IO surrogates therefore constitute an appealing alternative to kinetic models in large scale networks simulations.

摘要

突触传递受一系列复杂且高度非线性的机制和途径调控,其中动力学对发送到突触后细胞的整体信号有深远影响。在模拟中,这些机制通常通过由状态变量和速率定律方程控制的动力学模型来表示。动力学模型中此类常微分方程(ODEs)的计算可能非常耗费计算资源,并且尽管已经开发出了高效处理ODEs的优化算法,但对众多大型复杂动力学模型进行模拟需要极其大量的计算能力。在此,我们提出了离子型谷氨酸能受体AMPAr和NMDAr动力学模型的一种替代表示形式,该形式由受体模型的输入 - 输出替代物组成,能够捕捉动力学模型中所见的非线性动力学。我们对这个输入 - 输出(IO)突触模型进行基准测试,并将其与动力学受体模型进行比较,以评估使用任一突触模型时所需的模拟时间,以及每个模型模拟所需的时间步数。在忠实于模型原始动力学的同时,我们的结果表明,在引发正常生理反应的条件下,IO突触模型比动力学模型需要更少的模拟时间,从而在保留受体复杂非线性动力学的同时提高了计算效率。因此,这些IO替代物在大规模网络模拟中构成了一种有吸引力的替代动力学模型的选择。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8980/4856223/557866e1e4ed/nihms781183f1.jpg

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