Arbabshirani Mohammad R, Plis Sergey, Sui Jing, Calhoun Vince D
The Mind Research Network, Albuquerque, NM 87106, USA; Geisinger Health System, Danville, PA 17822, USA.
The Mind Research Network, Albuquerque, NM 87106, USA.
Neuroimage. 2017 Jan 15;145(Pt B):137-165. doi: 10.1016/j.neuroimage.2016.02.079. Epub 2016 Mar 21.
Neuroimaging-based single subject prediction of brain disorders has gained increasing attention in recent years. Using a variety of neuroimaging modalities such as structural, functional and diffusion MRI, along with machine learning techniques, hundreds of studies have been carried out for accurate classification of patients with heterogeneous mental and neurodegenerative disorders such as schizophrenia and Alzheimer's disease. More than 500 studies have been published during the past quarter century on single subject prediction focused on a multiple brain disorders. In the first part of this study, we provide a survey of more than 200 reports in this field with a focus on schizophrenia, mild cognitive impairment (MCI), Alzheimer's disease (AD), depressive disorders, autism spectrum disease (ASD) and attention-deficit hyperactivity disorder (ADHD). Detailed information about those studies such as sample size, type and number of extracted features and reported accuracy are summarized and discussed. To our knowledge, this is by far the most comprehensive review of neuroimaging-based single subject prediction of brain disorders. In the second part, we present our opinion on major pitfalls of those studies from a machine learning point of view. Common biases are discussed and suggestions are provided. Moreover, emerging trends such as decentralized data sharing, multimodal brain imaging, differential diagnosis, disease subtype classification and deep learning are also discussed. Based on this survey, there is extensive evidence showing the great potential of neuroimaging data for single subject prediction of various disorders. However, the main bottleneck of this exciting field is still the limited sample size, which could be potentially addressed by modern data sharing models such as the ones discussed in this paper. Emerging big data technologies and advanced data-intensive machine learning methodologies such as deep learning have coincided with an increasing need for accurate, robust and generalizable single subject prediction of brain disorders during an exciting time. In this report, we survey the past and offer some opinions regarding the road ahead.
近年来,基于神经影像学的脑部疾病单受试者预测受到了越来越多的关注。利用各种神经影像学模态,如结构、功能和扩散磁共振成像,以及机器学习技术,已经开展了数百项研究,以准确分类患有精神分裂症和阿尔茨海默病等异质性精神和神经退行性疾病的患者。在过去的四分之一个世纪里,已经发表了500多项关于聚焦多种脑部疾病的单受试者预测的研究。在本研究的第一部分,我们对该领域的200多篇报告进行了综述,重点关注精神分裂症、轻度认知障碍(MCI)、阿尔茨海默病(AD)、抑郁症、自闭症谱系障碍(ASD)和注意力缺陷多动障碍(ADHD)。总结并讨论了这些研究的详细信息,如样本量、提取特征的类型和数量以及报告的准确率。据我们所知,这是迄今为止对基于神经影像学的脑部疾病单受试者预测最全面的综述。在第二部分,我们从机器学习的角度阐述了这些研究的主要缺陷。讨论了常见偏差并提供了建议。此外,还讨论了去中心化数据共享、多模态脑成像、鉴别诊断、疾病亚型分类和深度学习等新兴趋势。基于这项综述,有大量证据表明神经影像学数据在单受试者预测各种疾病方面具有巨大潜力。然而,这个令人兴奋的领域的主要瓶颈仍然是样本量有限,这可能通过本文讨论的现代数据共享模型来潜在解决。在这个令人兴奋的时期,新兴的大数据技术和先进的数据密集型机器学习方法,如深度学习,与对准确、稳健和可推广的脑部疾病单受试者预测的需求不断增加相契合。在本报告中我们回顾过去并对未来之路提出一些看法。