Department of Computer Science University of Oxford Oxford, UK.
Department of Statistics University of Oxford Oxford, UK.
R Soc Open Sci. 2015 Dec 23;2(12):150499. doi: 10.1098/rsos.150499. eCollection 2015 Dec.
As cardiac cell models become increasingly complex, a correspondingly complex 'genealogy' of inherited parameter values has also emerged. The result has been the loss of a direct link between model parameters and experimental data, limiting both reproducibility and the ability to re-fit to new data. We examine the ability of approximate Bayesian computation (ABC) to infer parameter distributions in the seminal action potential model of Hodgkin and Huxley, for which an immediate and documented connection to experimental results exists. The ability of ABC to produce tight posteriors around the reported values for the gating rates of sodium and potassium ion channels validates the precision of this early work, while the highly variable posteriors around certain voltage dependency parameters suggests that voltage clamp experiments alone are insufficient to constrain the full model. Despite this, Hodgkin and Huxley's estimates are shown to be competitive with those produced by ABC, and the variable behaviour of posterior parametrized models under complex voltage protocols suggests that with additional data the model could be fully constrained. This work will provide the starting point for a full identifiability analysis of commonly used cardiac models, as well as a template for informative, data-driven parametrization of newly proposed models.
随着心脏细胞模型变得越来越复杂,与之相应的遗传性参数值的“族谱”也变得复杂起来。其结果是模型参数与实验数据之间失去了直接联系,限制了可重复性和对新数据进行重新拟合的能力。我们考察了近似贝叶斯计算(ABC)在 Hodgkin 和 Huxley 开创性的动作电位模型中推断参数分布的能力,该模型与实验结果存在直接的、有文件记录的联系。ABC 能够在钠离子和钾离子通道门控率的报告值周围产生紧密的后验分布,这验证了这项早期工作的精度,而某些电压依赖性参数周围高度变化的后验分布表明,仅电压钳实验不足以约束完整的模型。尽管如此,Hodgkin 和 Huxley 的估计值与 ABC 产生的估计值具有竞争力,并且在复杂电压协议下参数化后验模型的可变行为表明,随着更多数据的出现,该模型可以得到完全约束。这项工作将为常用心脏模型的完全可识别性分析提供起点,并为新提出的模型提供信息丰富、数据驱动的参数化模板。