Gatti Carlo, Saleh Gabriele, Lo Presti Leonardo
CNR-ISTM Istituto di Scienze e Tecnologie Molecolari, via Golgi 19, Milano I-20133, Italy.
Moscow Institute of Physics and Technology, 9 Institutskiy per, Dolgoprudny, Moscow region 141700, Russian Federation.
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2016 Apr;72(Pt 2):180-93. doi: 10.1107/S2052520616003450. Epub 2016 Apr 1.
The Source Function (SF), introduced in 1998 by Richard Bader and Carlo Gatti, is succinctly reviewed and a number of paradigmatic applications to in vacuo and crystal systems are illustrated to exemplify how the SF may be used to discuss chemical bonding in both conventional and highly challenging cases. The SF enables the electron density to be seen at a point determined by source contributions from the atoms or a group of atoms of a system, and it is therefore well linked to the chemist's awareness that any local property and chemical behaviour is to some degree influenced by all the remaining parts of a system. The key and captivating feature of the SF is that its evaluation requires only knowledge of the electron density (ED) of a system, thereby enabling a comparison of ab initio and X-ray diffraction derived electron density properties on a common and rigorous basis. The capability of the SF to detect electron-delocalization effects and to quantify their degree of transferability is systematically explored in this paper through the analysis and comparison of experimentally X-ray derived Source Function patterns in benzene, naphthalene and (±)-8'-benzhydrylideneamino-1,1'-binaphthyl-2-ol (BAB) molecular crystals. It is shown that the SF tool recovers the characteristic SF percentage patterns caused by π-electron conjugation in the first two paradigmatic aromatic molecules in almost perfect quantitative agreement with those obtained from ab initio periodic calculations. Moreover, the effect of chemical substitution on the degree of transferability of such patterns to the benzene- and naphthalene-like moieties of BAB is neatly shown and quantified by the observed systematic deviations, relative to benzene and naphthalene, of only those SF contributions from the substituted C atoms. Finally, the capability of the SF to reveal electron-delocalization effects is challenged by using a promolecule density, rather than the proper quantum mechanical density, to determine the changes in SF patterns along the cyclohexene, 1,3-cyclohexadiene and benzene molecule series. It is shown that, differently from the proper quantum density, the promolecular density is unable to reproduce the SF trends anticipated by the increase of electron delocalization along the series, therefore ruling out the geometrical effect as being the only cause for the observed SF patterns changes.
1998年由理查德·巴德(Richard Bader)和卡洛·加蒂(Carlo Gatti)引入的源函数(SF),在此进行简要回顾,并举例说明其在真空和晶体系统中的一些典型应用,以例证如何使用源函数来讨论常规和极具挑战性情况下的化学键合。源函数能使电子密度在由系统中原子或一组原子的源贡献所确定的点上被观察到,因此它与化学家的认识紧密相关,即任何局部性质和化学行为在某种程度上都会受到系统其余部分的影响。源函数的关键且引人入胜的特征在于,其评估仅需要系统电子密度(ED)的知识,从而能够在共同且严格的基础上比较从头算和X射线衍射得出的电子密度性质。本文通过对苯、萘和(±)-8'-二苯亚甲基氨基-1,1'-联萘-2-醇(BAB)分子晶体中实验性X射线衍生的源函数模式进行分析和比较,系统地探究了源函数检测电子离域效应并量化其转移程度的能力。结果表明,源函数工具在前两个典型芳香分子中恢复了由π电子共轭引起的特征源函数百分比模式,与从头算周期性计算得到的结果几乎完全定量一致。此外,通过观察到的仅来自取代碳原子的那些源函数贡献相对于苯和萘的系统偏差,清晰地展示并量化了化学取代对这种模式向BAB的苯和萘样部分转移程度的影响。最后,通过使用前分子密度而非适当的量子力学密度来确定沿环己烯、1,3 - 环己二烯和苯分子系列的源函数模式变化,对源函数揭示电子离域效应的能力提出了挑战。结果表明,与适当的量子密度不同,前分子密度无法再现随着系列中电子离域增加而预期的源函数趋势,因此排除了几何效应是观察到的源函数模式变化的唯一原因。