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phylosignal:一个用于测量、检验和探索系统发育信号的R软件包。

phylosignal: an R package to measure, test, and explore the phylogenetic signal.

作者信息

Keck François, Rimet Frédéric, Bouchez Agnès, Franc Alain

机构信息

UMR CARRTEL Institut National de la Recherche Agronomique (INRA) F-74203 Thonon France; UMR CARRTEL Université Savoie Mont-Blanc F-73011 Chambéry France.

UMR BIOGECO Institut National de la Recherche Agronomique (INRA) F-33610 Cestas France.

出版信息

Ecol Evol. 2016 Mar 19;6(9):2774-80. doi: 10.1002/ece3.2051. eCollection 2016 May.

Abstract

Phylogenetic signal is the tendency for closely related species to display similar trait values as a consequence of their phylogenetic proximity. Ecologists and evolutionary biologists are becoming increasingly interested in studying the phylogenetic signal and the processes which drive patterns of trait values in the phylogeny. Here, we present a new R package, phylosignal which provides a collection of tools to explore the phylogenetic signal for continuous biological traits. These tools are mainly based on the concept of autocorrelation and have been first developed in the field of spatial statistics. To illustrate the use of the package, we analyze the phylogenetic signal in pollution sensitivity for 17 species of diatoms.

摘要

系统发育信号是指由于系统发育上的接近,亲缘关系较近的物种倾向于表现出相似的性状值。生态学家和进化生物学家对研究系统发育信号以及驱动系统发育中性状值模式的过程越来越感兴趣。在这里,我们展示了一个新的R包phylosignal,它提供了一系列工具来探索连续生物学性状的系统发育信号。这些工具主要基于自相关的概念,最初是在空间统计学领域开发的。为了说明该包的使用方法,我们分析了17种硅藻对污染敏感性的系统发育信号。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eb66/4863004/1c01ab1bcb14/ECE3-6-2774-g001.jpg

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