Rozov Alexey, Westhof Eric, Yusupov Marat, Yusupova Gulnara
Department of Integrated Structural Biology, Institute of Genetics and Molecular and Cellular Biology, INSERM, U964; CNRS, UMR7104/University of Strasbourg, 1 rue Laurent Fries, 67404 Illkirch, France.
Architecture & Reactivity of RNA, University of Strasbourg, Institute of Molecular and Cellular Biology of the CNRS, UPR9002, 15 rue R. Descartes, 67084 Strasbourg, France.
Nucleic Acids Res. 2016 Jul 27;44(13):6434-41. doi: 10.1093/nar/gkw431. Epub 2016 May 12.
Precise conversion of genetic information into proteins is essential to cellular health. However, a margin of error exists and is at its highest on the stage of translation of mRNA by the ribosome. Here we present three crystal structures of 70S ribosome complexes with messenger RNA and transfer RNAs and show that when a G•U base pair is at the first position of the codon-anticodon helix a conventional wobble pair cannot form because of inescapable steric clash between the guanosine of the A codon and the key nucleotide of decoding center adenosine 1493 of 16S rRNA. In our structure the rigid ribosomal decoding center, which is identically shaped for cognate or near-cognate tRNAs, forces this pair to adopt a geometry close to that of a canonical G•C pair. We further strengthen our hypothesis that spatial mimicry due either to base tautomerism or ionization dominates the translation infidelity mechanism.
将遗传信息精确转化为蛋白质对细胞健康至关重要。然而,错误率是存在的,且在核糖体翻译信使核糖核酸(mRNA)的阶段达到最高。在此,我们展示了70S核糖体与信使核糖核酸及转运核糖核酸(tRNA)复合物的三种晶体结构,并表明当一个鸟嘌呤-尿嘧啶(G•U)碱基对处于密码子-反密码子螺旋的首位时,由于A密码子的鸟苷与16S核糖体RNA(rRNA)解码中心关键核苷酸腺苷1493之间不可避免的空间冲突,常规的摆动碱基对无法形成。在我们的结构中,对同源或近同源tRNA形状相同的刚性核糖体解码中心,迫使该碱基对采用接近标准G•C碱基对的几何形状。我们进一步强化了我们的假设,即碱基互变异构或电离导致的空间模拟主导了翻译错误机制。