Nguyen Ngoc-Lan, Kim Yeon-Ju, Hoang Van-An, Subramaniyam Sathiyamoorthy, Kang Jong-Pyo, Kang Chang Ho, Yang Deok-Chun
Korean Ginseng Center and Ginseng Genetic Resource Bank, Kyung-Hee University, Yongin-si, Gyeonggi-do, Republic of Korea.
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, JinJu-si, Gyeongsangnam-do, Republic of Korea.
PLoS One. 2016 May 17;11(5):e0155055. doi: 10.1371/journal.pone.0155055. eCollection 2016.
Traditional molecular methods have been used to examine bacterial communities in ginseng-cultivated soil samples in a time-dependent manner. Despite these efforts, our understanding of the bacterial community is still inadequate. Therefore, in this study, a high-throughput sequencing approach was employed to investigate bacterial diversity in various ginseng field soil samples over cultivation times of 2, 4, and 6 years in the first and second rounds of cultivation. We used non-cultivated soil samples to perform a comparative study. Moreover, this study assessed changes in the bacterial community associated with soil depth and the health state of the ginseng. Bacterial richness decreased through years of cultivation. This study detected differences in relative abundance of bacterial populations between the first and second rounds of cultivation, years of cultivation, and health states of ginseng. These bacterial populations were mainly distributed in the classes Acidobacteria, Alphaproteobacteria, Deltaproteobacteria, Gammaproteobacteria, and Sphingobacteria. In addition, we found that pH, available phosphorus, and exchangeable Ca+ seemed to have high correlations with bacterial class in ginseng cultivated soil.
传统分子方法已被用于以时间依赖的方式检测人参种植土壤样本中的细菌群落。尽管做出了这些努力,我们对细菌群落的了解仍然不足。因此,在本研究中,采用高通量测序方法来研究第一轮和第二轮种植中2年、4年和6年种植期的各种人参田间土壤样本中的细菌多样性。我们使用未耕种的土壤样本进行比较研究。此外,本研究评估了与土壤深度和人参健康状况相关的细菌群落变化。细菌丰富度随着种植年份的增加而降低。本研究检测到第一轮和第二轮种植、种植年份以及人参健康状况之间细菌种群相对丰度的差异。这些细菌种群主要分布在酸杆菌纲、α-变形菌纲、δ-变形菌纲、γ-变形菌纲和鞘脂杆菌纲中。此外,我们发现pH值、有效磷和交换性钙似乎与人参种植土壤中的细菌纲有高度相关性。