Koreny Ludek, Field Mark C
School of Life Sciences, University of Dundee, Dundee, UK
School of Life Sciences, University of Dundee, Dundee, UK.
Genome Biol Evol. 2016 Sep 19;8(9):2663-71. doi: 10.1093/gbe/evw087.
The emergence of the nucleus was a major event of eukaryogenesis. How the nuclear envelope (NE) arose and acquired functions governing chromatin organization and epigenetic control has direct bearing on origins of developmental/stage-specific expression programs. The configuration of the NE and the associated lamina in the last eukaryotic common ancestor (LECA) is of major significance and can provide insight into activities within the LECA nucleus. Subsequent lamina evolution, alterations, and adaptations inform on the variation and selection of distinct mechanisms that subtend gene expression in distinct taxa. Understanding lamina evolution has been difficult due to the diversity and limited taxonomic distributions of the three currently known highly distinct nuclear lamina. We rigorously searched available sequence data for an expanded view of the distribution of known lamina and lamina-associated proteins. While the lamina proteins of plants and trypanosomes are indeed taxonomically restricted, homologs of metazoan lamins and key lamin-binding proteins have significantly broader distributions, and a lamin gene tree supports vertical evolution from the LECA. Two protist lamins from highly divergent taxa target the nucleus in mammalian cells and polymerize into filamentous structures, suggesting functional conservation of distant lamin homologs. Significantly, a high level of divergence of lamin homologs within certain eukaryotic groups and the apparent absence of lamins and/or the presence of seemingly different lamina proteins in many eukaryotes suggests great evolutionary plasticity in structures at the NE, and hence mechanisms of chromatin tethering and epigenetic gene control.
细胞核的出现是真核生物起源的一个重大事件。核膜(NE)如何产生并获得调控染色质组织和表观遗传控制的功能,与发育/阶段特异性表达程序的起源直接相关。最后一个真核生物共同祖先(LECA)中核膜和相关核纤层的构型具有重要意义,能够为LECA细胞核内的活动提供见解。随后核纤层的进化、改变和适应揭示了不同分类群中支撑基因表达的不同机制的变异和选择。由于目前已知的三种高度不同的核纤层具有多样性且分类分布有限,理解核纤层的进化一直很困难。我们严格搜索了可用的序列数据,以更全面地了解已知核纤层和核纤层相关蛋白的分布。虽然植物和锥虫的核纤层蛋白确实在分类学上受到限制,但后生动物核纤层蛋白和关键核纤层结合蛋白的同源物分布要广泛得多,并且一个核纤层基因树支持从LECA的垂直进化。来自高度不同分类群的两种原生生物核纤层蛋白在哺乳动物细胞中靶向细胞核并聚合成丝状结构,这表明远缘核纤层同源物具有功能保守性。重要的是,某些真核生物群体内核纤层同源物的高度分化,以及许多真核生物中明显不存在核纤层蛋白和/或存在看似不同的核纤层蛋白,表明核膜结构具有很大的进化可塑性,因此染色质锚定和表观遗传基因控制机制也具有很大的进化可塑性。