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p63 DNA结合结构域的溶液结构与结合特异性

Solution structure and binding specificity of the p63 DNA binding domain.

作者信息

Enthart Andreas, Klein Christian, Dehner Alexander, Coles Murray, Gemmecker Gerd, Kessler Horst, Hagn Franz

机构信息

Center for Integrated Protein Science Munich (CIPSM) at the Department Chemie, Technische Universität München, 85747 Garching, Germany.

Institute for Advanced Study, Technische Universität München, 85748 Garching, Germany.

出版信息

Sci Rep. 2016 May 26;6:26707. doi: 10.1038/srep26707.


DOI:10.1038/srep26707
PMID:27225672
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4880913/
Abstract

p63 is a close homologue of p53 and, together with p73, is grouped into the p53 family of transcription factors. p63 is known to be involved in the induction of controlled apoptosis important for differentiation processes, germ line integrity and development. Despite its high homology to p53, especially within the DNA binding domain (DBD), p63-DBD does not show cooperative DNA binding properties and is significantly more stable against thermal and chemical denaturation. Here, we determined the solution structure of p63-DBD and show that it is markedly less dynamic than p53-DBD. In addition, we also investigate the effect of a double salt bridge present in p53-DBD, but not in p63-DBD on the cooperative binding behavior and specificity to various DNA sites. Restoration of the salt bridges in p63-DBD by mutagenesis leads to enhanced binding affinity to p53-specific, but not p63-specific response elements. Furthermore, we show that p63-DBD is capable of binding to anti-apoptotic BclxL via its DNA binding interface, a feature that has only been shown for p53 so far. These data suggest that all p53 family members - despite alterations in the specificity and binding affinity - are capable of activating pro-apoptotic pathways in a tissue specific manner.

摘要

p63是p53的紧密同源物,与p73一起被归入p53转录因子家族。已知p63参与诱导对分化过程、生殖系完整性和发育至关重要的可控凋亡。尽管它与p53具有高度同源性,尤其是在DNA结合结构域(DBD)内,但p63-DBD不显示协同DNA结合特性,并且对热变性和化学变性具有明显更高的稳定性。在这里,我们确定了p63-DBD的溶液结构,并表明它的动态性明显低于p53-DBD。此外,我们还研究了p53-DBD中存在但p63-DBD中不存在的双盐桥对各种DNA位点的协同结合行为和特异性的影响。通过诱变恢复p63-DBD中的盐桥会导致对p53特异性而非p63特异性反应元件的结合亲和力增强。此外,我们表明p63-DBD能够通过其DNA结合界面与抗凋亡蛋白BclxL结合,这一特性迄今为止仅在p53中得到证实。这些数据表明,所有p53家族成员——尽管特异性和结合亲和力有所改变——都能够以组织特异性方式激活促凋亡途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/933c/4880913/baccc939c167/srep26707-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/933c/4880913/050ce69a880e/srep26707-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/933c/4880913/80137d0d04cc/srep26707-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/933c/4880913/e95c8efcd9ec/srep26707-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/933c/4880913/4c3c785f7af0/srep26707-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/933c/4880913/baccc939c167/srep26707-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/933c/4880913/050ce69a880e/srep26707-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/933c/4880913/80137d0d04cc/srep26707-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/933c/4880913/e95c8efcd9ec/srep26707-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/933c/4880913/4c3c785f7af0/srep26707-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/933c/4880913/baccc939c167/srep26707-f5.jpg

相似文献

[1]
Solution structure and binding specificity of the p63 DNA binding domain.

Sci Rep. 2016-5-26

[2]
The p73 DNA binding domain displays enhanced stability relative to its homologue, the tumor suppressor p53, and exhibits cooperative DNA binding.

Biochemistry. 2008-3-11

[3]
Intrinsic aggregation propensity of the p63 and p73 TI domains correlates with p53R175H interaction and suggests further significance of aggregation events in the p53 family.

Cell Death Differ. 2016-12

[4]
Backbone resonance assignments of the human p73 DNA binding domain.

Biomol NMR Assign. 2016-4

[5]
Crystal structures of the DNA-binding domain tetramer of the p53 tumor suppressor family member p73 bound to different full-site response elements.

J Biol Chem. 2012-12-14

[6]
Structure and kinetic stability of the p63 tetramerization domain.

J Mol Biol. 2011-11-12

[7]
Control of p53-dependent transcription and enhancer activity by the p53 family member p63.

J Biol Chem. 2019-5-21

[8]
Structural Evolution and Dynamics of the p53 Proteins.

Cold Spring Harb Perspect Med. 2017-4-3

[9]
Identification of DeltaN isoform and polyadenylation site choice variants in molluscan p63/p73-like homologues.

Mar Biotechnol (NY). 2007

[10]
A novel approach to cancer treatment using structural hybrids of the p53 gene family.

Cancer Gene Ther. 2012-9-7

引用本文的文献

[1]
Disease-related p63 DBD mutations impair DNA binding by distinct mechanisms and varying degree.

Cell Death Dis. 2023-4-18

[2]
The paradoxical roles of miR-4295 in human cancer: Implications in pathogenesis and personalized medicine.

Genes Dis. 2020-10-6

[3]
Delineating functional mechanisms of the p53/p63/p73 family of transcription factors through identification of protein-protein interactions using interface mimicry.

Mol Carcinog. 2022-7

[4]
Structural diversity of p63 and p73 isoforms.

Cell Death Differ. 2022-5

[5]
Evolutionary history of the p53 family DNA-binding domain: insights from an Alvinella pompejana homolog.

Cell Death Dis. 2022-3-7

[6]
Homologs of the Tumor Suppressor Protein p53: A Bioinformatics Study for Drug Design.

MOJ Proteom Bioinform. 2020

[7]
p63 and p53: Collaborative Partners or Dueling Rivals?

Front Cell Dev Biol. 2021-7-5

[8]
Rely on Each Other: DNA Binding Cooperativity Shapes p53 Functions in Tumor Suppression and Cancer Therapy.

Cancers (Basel). 2021-5-17

[9]
Dissecting the DNA binding landscape and gene regulatory network of p63 and p53.

Elife. 2020-12-2

[10]
Characterization of p53 Family Homologs in Evolutionary Remote Branches of Holozoa.

Int J Mol Sci. 2019-12-18

本文引用的文献

[1]
Pliable DNA conformation of response elements bound to transcription factor p63.

J Biol Chem. 2012-1-12

[2]
An induced fit mechanism regulates p53 DNA binding kinetics to confer sequence specificity.

EMBO J. 2011-4-26

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Proc Natl Acad Sci U S A. 2011-4-4

[4]
Interaction of regulators Mdm2 and Mdmx with transcription factors p53, p63 and p73.

Cell Cycle. 2010-11-15

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Understanding wild-type and mutant p53 activities in human cancer: new landmarks on the way to targeted therapies.

Cancer Gene Ther. 2010-10-22

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Life or death: p53-induced apoptosis requires DNA binding cooperativity.

Cell Cycle. 2010-10-11

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An efficient strategy for assignment of cross-peaks in 3D heteronuclear NOESY experiments.

J Biomol NMR. 1999-10

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DNA binding cooperativity of p53 modulates the decision between cell-cycle arrest and apoptosis.

Mol Cell. 2010-5-14

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BclxL changes conformation upon binding to wild-type but not mutant p53 DNA binding domain.

J Biol Chem. 2009-12-2

[10]
The first 30 years of p53: growing ever more complex.

Nat Rev Cancer. 2009-10

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