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从大鼠粪便中分离出的一种新型肠道杆菌噬菌体CAjan的特性分析。

Characterisation of a novel enterobacteria phage, CAjan, isolated from rat faeces.

作者信息

Carstens Alexander B, Kot Witold, Lametsch Rene, Neve Horst, Hansen Lars H

机构信息

Department of Environmental Science, Aarhus University, Frederiksborgvej, 399, 4000, Roskilde, Denmark.

Department of Food Science, Faculty of Science, University of Copenhagen, Rolighedsvej 26, 1958, Frederiksberg C, Denmark.

出版信息

Arch Virol. 2016 Aug;161(8):2219-26. doi: 10.1007/s00705-016-2901-0. Epub 2016 May 26.

Abstract

In this study, we describe the isolation and characterisation of the novel enterobacteria phage CAjan. This phage belongs to the order Caudovirales and the family Siphoviridae. The phage possesses a linear, double-stranded DNA genome consisting of 59,670 bp with a G+C content of 44.7 % and 91 predicted open reading frames (ORFs). Putative functions were assigned to 39 of the ORFs (37.4 %). The phage structural genes were furthermore functionally characterised by LC MS/MS. CAjan, together with Escherichia phage Seurat and Escherichia phage slur01, represent a novel and genetically distinct clade of Siphoviridae phages that could be considered to constitute a new phage genus. Despite limited sequence similarity, the phages in this group share a number of other common features, including genome structure and the presence of queuosine biosynthesis genes.

摘要

在本研究中,我们描述了新型肠道杆菌噬菌体CAjan的分离与特性。该噬菌体属于有尾噬菌体目和长尾噬菌体科。该噬菌体拥有一个线性双链DNA基因组,由59,670个碱基对组成,G+C含量为44.7%,有91个预测的开放阅读框(ORF)。39个ORF(37.4%)被赋予了推定功能。此外,通过液相色谱-串联质谱法对噬菌体结构基因进行了功能表征。CAjan与大肠杆菌噬菌体Seurat和大肠杆菌噬菌体slur01一起,代表了长尾噬菌体科噬菌体的一个新的、遗传上不同的进化枝,可被认为构成一个新的噬菌体属。尽管序列相似性有限,但该组中的噬菌体具有许多其他共同特征,包括基因组结构和喹喔啉生物合成基因的存在。

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