Kwak Jin Tae, Hewitt Stephen M, Kajdacsy-Balla André Alexander, Sinha Saurabh, Bhargava Rohit
Department of Computer Science and Engineering, Sejong University, Seoul, 05006, Korea.
Tissue Array Research Program, Laboratory of Pathology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, 20850, USA.
BMC Bioinformatics. 2016 Jun 1;17(1):227. doi: 10.1186/s12859-016-1086-6.
The current practice of histopathology review is limited in speed and accuracy. The current diagnostic paradigm does not fully describe the complex and complicated patterns of cancer. To address these needs, we develop an automated and objective system that facilitates a comprehensive and easy information management and decision-making. We also develop a tissue similarity measure scheme to broaden our understanding of tissue characteristics.
The system includes a database of previously evaluated prostate tissue images, clinical information and a tissue retrieval process. In the system, a tissue is characterized by its morphology. The retrieval process seeks to find the closest matching cases with the tissue of interest. Moreover, we define 9 morphologic criteria by which a pathologist arrives at a histomorphologic diagnosis. Based on the 9 criteria, true tissue similarity is determined and serves as the gold standard of tissue retrieval. Here, we found a minimum of 4 and 3 matching cases, out of 5, for ~80 % and ~60 % of the queries when a match was defined as the tissue similarity score ≥5 and ≥6, respectively. We were also able to examine the relationship between tissues beyond the Gleason grading system due to the tissue similarity scoring system.
Providing the closest matching cases and their clinical information with pathologists will help to conduct consistent and reliable diagnoses. Thus, we expect the system to facilitate quality maintenance and quality improvement of cancer pathology.
目前组织病理学检查的实际操作在速度和准确性方面存在局限。当前的诊断模式并不能完全描述癌症复杂多样的模式。为满足这些需求,我们开发了一个自动化且客观的系统,该系统有助于进行全面且便捷的信息管理和决策制定。我们还开发了一种组织相似性度量方案,以加深我们对组织特征的理解。
该系统包括一个包含先前评估过的前列腺组织图像、临床信息的数据库以及一个组织检索过程。在该系统中,一个组织通过其形态学特征来表征。检索过程旨在找到与感兴趣组织最匹配的病例。此外,我们定义了9个形态学标准,病理学家可依据这些标准做出组织形态学诊断。基于这9个标准,确定真实的组织相似性,并将其作为组织检索的金标准。在此,当将匹配定义为组织相似性得分分别≥5和≥6时,我们发现对于约80%和约60%的查询,在5个病例中分别至少有4个和3个匹配病例。由于组织相似性评分系统,我们还能够研究超出 Gleason 分级系统的组织之间的关系。
为病理学家提供最匹配的病例及其临床信息将有助于做出一致且可靠的诊断。因此,我们期望该系统能促进癌症病理学的质量维持和质量提升。