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利用药物银行进行计算机辅助药物探索与发现。

Using DrugBank for In Silico Drug Exploration and Discovery.

作者信息

Wishart David S, Wu Anthony

机构信息

Departments of Computing Science and Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.

出版信息

Curr Protoc Bioinformatics. 2016 Jun 20;54:14.4.1-14.4.31. doi: 10.1002/cpbi.1.

Abstract

DrugBank is a fully curated drug and drug target database that contains 8174 drug entries including 1944 FDA approved small-molecule drugs, 198 FDA-approved biotech (protein/peptide) drugs, 93 nutraceuticals, and over 6000 experimental drugs. Additionally, 4300 non-redundant protein (i.e., drug target/enzyme/transporter/carrier) sequences are linked to these drug entries. DrugBank is primarily focused on providing both the query/search tools and biophysical data needed to facilitate drug discovery and drug development. This unit provides readers with a detailed description of how to effectively use the DrugBank database and how to navigate through the DrugBank Web site. It also provides specific examples of how to find chemical homologs of potential drug leads and how to identify potential drug targets from newly sequenced tumor samples. The intent of this unit is to give readers an introduction to the field of Web-based drug discovery and to show how cheminformatics can be seamlessly integrated into the field of bioinformatics. © 2016 by John Wiley & Sons, Inc.

摘要

药物银行(DrugBank)是一个经过全面整理的药物和药物靶点数据库,包含8174条药物记录,其中包括1944种美国食品药品监督管理局(FDA)批准的小分子药物、198种FDA批准的生物技术(蛋白质/肽)药物、93种营养保健品以及6000多种实验性药物。此外,4300条非冗余蛋白质(即药物靶点/酶/转运蛋白/载体)序列与这些药物记录相关联。药物银行主要致力于提供促进药物发现和药物开发所需的查询/搜索工具及生物物理数据。本单元向读者详细介绍如何有效使用药物银行数据库以及如何浏览药物银行网站。它还提供了具体示例,说明如何找到潜在药物先导物的化学类似物,以及如何从新测序的肿瘤样本中识别潜在的药物靶点。本单元旨在让读者初步了解基于网络的药物发现领域,并展示化学信息学如何能无缝融入生物信息学领域。© 2016 约翰威立国际出版公司

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