Xia Zongwei, Bai Edith, Wang Qingkui, Gao Decai, Zhou Jidong, Jiang Ping, Wu Jiabing
Institute of Applied Ecology, Chinese Academy of Sciences Shenyang, China.
Front Microbiol. 2016 Jul 13;7:1106. doi: 10.3389/fmicb.2016.01106. eCollection 2016.
Microbes are widely distributed in soils and play a very important role in nutrient cycling and ecosystem services. To understand the biogeographic distribution of forest soil bacteria, we collected 115 soil samples in typical forest ecosystems across eastern China to investigate their bacterial community compositions using Illumina MiSeq high throughput sequencing based on 16S rRNA. We obtained 4,667,656 sequences totally and more than 70% of these sequences were classified into five dominant groups, i.e., Actinobacteria, Acidobacteria, Alphaproteobacteria, Verrucomicrobia, and Planctomycetes (relative abundance >5%). The bacterial diversity showed a parabola shape along latitude and the maximum diversity appeared at latitudes between 33.50°N and 40°N, an area characterized by warm-temperate zones and moderate temperature, neutral soil pH and high substrate availability (soil C and N) from dominant deciduous broad-leaved forests. Pairwise dissimilarity matrix in bacterial community composition showed that bacterial community structure had regional similarity and the latitude of 30°N could be used as the dividing line between southern and northern forest soils. Soil properties and climate conditions (MAT and MAP) greatly accounted for the differences in the soil bacterial structure. Among all soil parameters determined, soil pH predominantly affected the diversity and composition of the bacterial community, and soil pH = 5 probably could be used as a threshold below which soil bacterial diversity might decline and soil bacterial community structure might change significantly. Moreover, soil exchangeable cations, especially Ca(2+) (ECa(2+)) and some other soil variables were also closely related to bacterial community structure. The selected environmental variables (21.11%) explained more of the bacterial community variation than geographic distance (15.88%), indicating that the edaphic properties and environmental factors played a more important role than geographic dispersal limitation in determining the bacterial community structure in Chinese forest soils.
微生物广泛分布于土壤中,在养分循环和生态系统服务中发挥着非常重要的作用。为了解森林土壤细菌的生物地理分布,我们在中国东部典型森林生态系统中采集了115个土壤样本,基于16S rRNA利用Illumina MiSeq高通量测序技术研究其细菌群落组成。我们总共获得了4,667,656条序列,其中70%以上的序列被归类为五个优势类群,即放线菌门、酸杆菌门、α-变形菌纲、疣微菌门和浮霉菌门(相对丰度>5%)。细菌多样性沿纬度呈抛物线状,最大多样性出现在北纬33.50°至40°之间,该区域以暖温带、温和的温度、中性土壤pH值以及来自优势落叶阔叶林的高底物可用性(土壤碳和氮)为特征。细菌群落组成的成对差异矩阵表明,细菌群落结构具有区域相似性,北纬30°可作为南方和北方森林土壤的分界线。土壤性质和气候条件(年均气温和年均降水量)在很大程度上解释了土壤细菌结构的差异。在所有测定的土壤参数中,土壤pH值对细菌群落的多样性和组成影响最大,土壤pH = 5可能可作为一个阈值,低于该阈值土壤细菌多样性可能下降,土壤细菌群落结构可能发生显著变化。此外,土壤交换性阳离子,尤其是Ca(2+)(有效钙)和其他一些土壤变量也与细菌群落结构密切相关。所选环境变量(21.11%)比地理距离(15.88%)解释了更多的细菌群落变异,表明土壤性质和环境因素在决定中国森林土壤细菌群落结构方面比地理扩散限制发挥了更重要的作用。