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食糖草食杆菌属,新属,新种,一种通过从实验室规模的沼气反应器中进行瘤胃富集培养分离得到的纤维素分解、厌氧、嗜热细菌。

Herbivorax saccincola gen. nov., sp. nov., a cellulolytic, anaerobic, thermophilic bacterium isolated via in sacco enrichments from a lab-scale biogas reactor.

作者信息

Koeck Daniela E, Mechelke Matthias, Zverlov Vladimir V, Liebl Wolfgang, Schwarz Wolfgang H

机构信息

Department of Microbiology, Technische Universität München, Emil-Ramann-Str. 4, D-85354 Freising-Weihenstephan, Germany.

Institute of Molecular Genetics, Russian Academy of Science, Kurchatov Sq. 2, 123182 Moscow, Russia.

出版信息

Int J Syst Evol Microbiol. 2016 Nov;66(11):4458-4463. doi: 10.1099/ijsem.0.001374. Epub 2016 Aug 4.

Abstract

A novel Gram-stain-positive, rod-shaped, anaerobic, thermophilic bacterium, strain GGR1T, was isolated from a thermophilic lab-scale biogas fermenter. The novel organism was effectively degrading crystalline cellulose. It seems to play a role in remineralization of plant biomass by hydrolysing its polysaccharides. 16S rRNA gene comparative sequence analysis demonstrated that the isolate formed a hitherto unknown subline within the family Ruminococcaceae. The closest phylogenetic relative of GGR1T among the taxa with validly published names was Clostridiumthermocellum, sharing 94.3 % 16S rRNA gene sequence similarity. Strain GGR1T was catalase-negative, indole-negative and produced acetate and ethanol as major end-products during fermentative cellulose utilization. The major cellular fatty acids (>1 %) were 16 : 0 iso fatty acid and 16 : 0 fatty acid. Cells were rod shaped and grew optimally at 60 °C and pH 7.0. The DNA G+C content was 34.9 mol%. A novel genus and species, Herbivoraxsaccincola gen. nov., sp. nov., is proposed on the basis of phylogenetic analysis and physiological properties of the novel isolate. Strain GGR1T (=DSM 101079T=CECT 9155T) represents the type strain for the novel genus and novel species Herbivoraxsaccincola gen. nov., sp. nov.

摘要

从一个嗜热实验室规模的沼气发酵罐中分离出了一种新型革兰氏阳性、杆状、厌氧、嗜热细菌,菌株GGR1T。这种新型微生物能够有效降解结晶纤维素。它似乎通过水解植物生物质的多糖在植物生物质的再矿化过程中发挥作用。16S rRNA基因比较序列分析表明,该分离株在瘤胃球菌科内形成了一个迄今未知的亚系。在有效发表名称的分类单元中,GGR1T最接近的系统发育亲缘种是热纤梭菌,16S rRNA基因序列相似性为94.3%。菌株GGR1T过氧化氢酶阴性、吲哚阴性,在发酵利用纤维素过程中产生乙酸和乙醇作为主要终产物。主要细胞脂肪酸(>1%)为16:0异脂肪酸和16:0脂肪酸。细胞呈杆状,在60°C和pH 7.0条件下生长最佳。DNA G+C含量为34.9 mol%。基于该新型分离株的系统发育分析和生理特性,提出了一个新属和新种,即食糖草食杆菌属(Herbivoraxsaccincola),新属,新种。菌株GGR1T(=DSM 101079T=CECT 9155T)代表食糖草食杆菌属(Herbivoraxsaccincola)新属、新种的模式菌株。

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