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单细胞小 RNA 转录组测序。

Single-cell sequencing of the small-RNA transcriptome.

机构信息

Ludwig Institute for Cancer Research, Stockholm, Sweden.

Department of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden.

出版信息

Nat Biotechnol. 2016 Dec;34(12):1264-1266. doi: 10.1038/nbt.3701. Epub 2016 Oct 31.

DOI:10.1038/nbt.3701
PMID:27798564
Abstract

Little is known about the heterogeneity of small-RNA expression as small-RNA profiling has so far required large numbers of cells. Here we present a single-cell method for small-RNA sequencing and apply it to naive and primed human embryonic stem cells and cancer cells. Analysis of microRNAs and fragments of tRNAs and small nucleolar RNAs (snoRNAs) reveals the potential of microRNAs as markers for different cell types and states.

摘要

目前对于小 RNA 表达的异质性知之甚少,因为小 RNA 分析迄今为止需要大量的细胞。在这里,我们提出了一种用于小 RNA 测序的单细胞方法,并将其应用于原始和诱导的人类胚胎干细胞和癌细胞。microRNA 以及 tRNA 和小核仁 RNA(snoRNA)片段的分析揭示了 microRNA 作为不同细胞类型和状态标记物的潜力。

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Science. 2016 Jan 22;351(6271):391-396. doi: 10.1126/science.aad6780. Epub 2015 Dec 31.
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The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition.在人胚胎干细胞从原始态向始发态转变过程中,代谢组调控表观遗传格局。
Nat Cell Biol. 2015 Dec;17(12):1523-35. doi: 10.1038/ncb3264. Epub 2015 Nov 16.
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Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos.
Nucleic Acids Res. 2025 Feb 8;53(4). doi: 10.1093/nar/gkaf070.
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Nat Rev Mol Cell Biol. 2025 May;26(5):337-346. doi: 10.1038/s41580-024-00822-z. Epub 2025 Jan 20.
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Inferring single-cell and spatial microRNA activity from transcriptomics data.从转录组学数据推断单细胞和空间微小RNA活性。
Commun Biol. 2025 Jan 18;8(1):87. doi: 10.1038/s42003-025-07454-9.
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Hepatology. 2024 Nov 29. doi: 10.1097/HEP.0000000000001177.
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Sci Rep. 2024 Apr 13;14(1):8570. doi: 10.1038/s41598-024-58870-6.
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