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后基因组时代寄生线虫“组学”研究审视

Perusal of parasitic nematode 'omics in the post-genomic era.

作者信息

Stoltzfus Jonathan D, Pilgrim Adeiye A, Herbert De'Broski R

机构信息

Department of Biology, Millersville University, Millersville, PA, United States.

Emory University School of Medicine MD/PhD Program, Atlanta, GA, United States.

出版信息

Mol Biochem Parasitol. 2017 Jul;215:11-22. doi: 10.1016/j.molbiopara.2016.11.003. Epub 2016 Nov 22.

Abstract

The advent of high-throughput, next-generation sequencing methods combined with advances in computational biology and bioinformatics have greatly accelerated discovery within biomedical research. This "post-genomics" era has ushered in powerful approaches allowing one to quantify RNA transcript and protein abundance for every gene in the genome - often for multiple conditions. Herein, we chronicle how the post-genomics era has advanced our overall understanding of parasitic nematodes through transcriptomics and proteomics and highlight some of the important advances made in each major nematode clade. We primarily focus on organisms relevant to human health, given that nematode infections significantly impact disability-adjusted life years (DALY) scores within the developing world, but we also discuss organisms of veterinary importance as well as those used as laboratory models. As such, we envision that this review will serve as a comprehensive resource for those seeking a better understanding of basic parasitic nematode biology as well as those interested in targets for vaccination and pharmacological intervention.

摘要

高通量、新一代测序方法的出现,再加上计算生物学和生物信息学的进展,极大地加速了生物医学研究中的发现。这个“后基因组学”时代带来了强大的方法,使人们能够量化基因组中每个基因的RNA转录本和蛋白质丰度——通常是在多种条件下。在此,我们记录了后基因组学时代如何通过转录组学和蛋白质组学推进了我们对寄生线虫的整体理解,并强调了每个主要线虫类群取得的一些重要进展。鉴于线虫感染对发展中世界的残疾调整生命年(DALY)得分有重大影响,我们主要关注与人类健康相关的生物,但我们也讨论了具有兽医重要性的生物以及用作实验室模型的生物。因此,我们设想这篇综述将为那些寻求更好地理解寄生线虫基础生物学的人以及对疫苗接种和药物干预靶点感兴趣的人提供全面的资源。

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