Brier Ann-Sofie B, Loft Anne, Madsen Jesper G S, Rosengren Thomas, Nielsen Ronni, Schmidt Søren F, Liu Zongzhi, Yan Qin, Gronemeyer Hinrich, Mandrup Susanne
Department of Biochemistry and Molecular Biology, University of Southern Denmark, 5230 Odense M, Denmark.
The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, 2200 Copenhagen N, Denmark.
Nucleic Acids Res. 2017 Feb 28;45(4):1743-1759. doi: 10.1093/nar/gkw1156.
The KDM5 family of histone demethylases removes the H3K4 tri-methylation (H3K4me3) mark frequently found at promoter regions of actively transcribed genes and is therefore generally considered to contribute to corepression. In this study, we show that knockdown (KD) of all expressed members of the KDM5 family in white and brown preadipocytes leads to deregulated gene expression and blocks differentiation to mature adipocytes. KDM5 KD leads to a considerable increase in H3K4me3 at promoter regions; however, these changes in H3K4me3 have a limited effect on gene expression per se. By contrast, genome-wide analyses demonstrate that KDM5A is strongly enriched at KDM5-activated promoters, which generally have high levels of H3K4me3 and are associated with highly expressed genes. We show that KDM5-activated genes include a large set of cell cycle regulators and that the KDM5s are necessary for mitotic clonal expansion in 3T3-L1 cells, indicating that KDM5 KD may interfere with differentiation in part by impairing proliferation. Notably, the demethylase activity of KDM5A is required for activation of at least a subset of pro-proliferative cell cycle genes. In conclusion, the KDM5 family acts as dual modulators of gene expression in preadipocytes and is required for early stage differentiation and activation of pro-proliferative cell cycle genes.
组蛋白去甲基化酶KDM5家族可去除活跃转录基因启动子区域常见的H3K4三甲基化(H3K4me3)标记,因此通常被认为与基因共抑制有关。在本研究中,我们发现白色和棕色前脂肪细胞中KDM5家族所有表达成员的敲低(KD)会导致基因表达失调,并阻断其向成熟脂肪细胞的分化。KDM5 KD导致启动子区域的H3K4me3显著增加;然而,H3K4me3的这些变化对基因表达本身的影响有限。相比之下,全基因组分析表明,KDM5A在KDM5激活的启动子上高度富集,这些启动子通常具有高水平的H3K4me3,并与高表达基因相关。我们发现KDM5激活的基因包括大量细胞周期调节因子,并且KDM5蛋白对于3T3-L1细胞的有丝分裂克隆扩增是必需的,这表明KDM5 KD可能部分通过损害增殖来干扰分化。值得注意的是,KDM5A的去甲基化酶活性是激活至少一部分促增殖细胞周期基因所必需的。总之,KDM5家族在前脂肪细胞中作为基因表达的双重调节因子,是早期分化和促增殖细胞周期基因激活所必需的。