• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

雄激素受体活性计算模型的开发与验证

Development and Validation of a Computational Model for Androgen Receptor Activity.

作者信息

Kleinstreuer Nicole C, Ceger Patricia, Watt Eric D, Martin Matthew, Houck Keith, Browne Patience, Thomas Russell S, Casey Warren M, Dix David J, Allen David, Sakamuru Srilatha, Xia Menghang, Huang Ruili, Judson Richard

机构信息

NIH/NIEHS/DNTP/The NTP Interagency Center for the Evaluation of Alternative Toxicological Methods , Research Triangle Park, North Carolina 27713, United States.

Integrated Laboratory Systems, Inc. , Research Triangle Park, North Carolina 27560, United States.

出版信息

Chem Res Toxicol. 2017 Apr 17;30(4):946-964. doi: 10.1021/acs.chemrestox.6b00347. Epub 2016 Dec 9.

DOI:10.1021/acs.chemrestox.6b00347
PMID:27933809
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5396026/
Abstract

Testing thousands of chemicals to identify potential androgen receptor (AR) agonists or antagonists would cost millions of dollars and take decades to complete using current validated methods. High-throughput in vitro screening (HTS) and computational toxicology approaches can more rapidly and inexpensively identify potential androgen-active chemicals. We integrated 11 HTS ToxCast/Tox21 in vitro assays into a computational network model to distinguish true AR pathway activity from technology-specific assay interference. The in vitro HTS assays probed perturbations of the AR pathway at multiple points (receptor binding, coregulator recruitment, gene transcription, and protein production) and multiple cell types. Confirmatory in vitro antagonist assay data and cytotoxicity information were used as additional flags for potential nonspecific activity. Validating such alternative testing strategies requires high-quality reference data. We compiled 158 putative androgen-active and -inactive chemicals from a combination of international test method validation efforts and semiautomated systematic literature reviews. Detailed in vitro assay information and results were compiled into a single database using a standardized ontology. Reference chemical concentrations that activated or inhibited AR pathway activity were identified to establish a range of potencies with reproducible reference chemical results. Comparison with existing Tier 1 AR binding data from the U.S. EPA Endocrine Disruptor Screening Program revealed that the model identified binders at relevant test concentrations (<100 μM) and was more sensitive to antagonist activity. The AR pathway model based on the ToxCast/Tox21 assays had balanced accuracies of 95.2% for agonist (n = 29) and 97.5% for antagonist (n = 28) reference chemicals. Out of 1855 chemicals screened in the AR pathway model, 220 chemicals demonstrated AR agonist or antagonist activity and an additional 174 chemicals were predicted to have potential weak AR pathway activity.

摘要

使用当前经过验证的方法来测试数千种化学物质以鉴定潜在的雄激素受体(AR)激动剂或拮抗剂,将耗资数百万美元且需要数十年才能完成。高通量体外筛选(HTS)和计算毒理学方法能够更快速且低成本地鉴定潜在的雄激素活性化学物质。我们将11种HTS ToxCast/Tox21体外试验整合到一个计算网络模型中,以区分真正的AR途径活性与技术特异性试验干扰。体外HTS试验在多个点(受体结合、共调节因子募集、基因转录和蛋白质产生)以及多种细胞类型中探究AR途径的扰动。确证性体外拮抗剂试验数据和细胞毒性信息被用作潜在非特异性活性的额外标志。验证此类替代测试策略需要高质量的参考数据。我们通过国际测试方法验证工作和半自动系统文献综述相结合的方式,汇编了158种假定的雄激素活性和非活性化学物质。详细的体外试验信息和结果使用标准化本体被汇编到一个单一数据库中。确定激活或抑制AR途径活性的参考化学物质浓度,以建立具有可重复参考化学物质结果的一系列效价。与来自美国环保署内分泌干扰物筛选计划的现有一级AR结合数据进行比较,结果表明该模型在相关测试浓度(<100μM)下鉴定出了结合剂,并且对拮抗剂活性更敏感。基于ToxCast/Tox21试验的AR途径模型对激动剂(n = 29)参考化学物质的平衡准确率为95.2%,对拮抗剂(n = 28)参考化学物质的平衡准确率为97.5%。在AR途径模型中筛选的1855种化学物质中,有220种化学物质表现出AR激动剂或拮抗剂活性,另外有174种化学物质预计具有潜在的弱AR途径活性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/2124f94acdc3/tx-2016-00347r_0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/99092f5df910/tx-2016-00347r_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/91e0a1f2243d/tx-2016-00347r_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/0292ccd4f33f/tx-2016-00347r_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/1c6ff41ba90d/tx-2016-00347r_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/fdc65f02b470/tx-2016-00347r_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/633fe6e19166/tx-2016-00347r_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/da476008b67a/tx-2016-00347r_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/6811258df938/tx-2016-00347r_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/2124f94acdc3/tx-2016-00347r_0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/99092f5df910/tx-2016-00347r_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/91e0a1f2243d/tx-2016-00347r_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/0292ccd4f33f/tx-2016-00347r_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/1c6ff41ba90d/tx-2016-00347r_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/fdc65f02b470/tx-2016-00347r_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/633fe6e19166/tx-2016-00347r_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/da476008b67a/tx-2016-00347r_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/6811258df938/tx-2016-00347r_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/75f3/5396026/2124f94acdc3/tx-2016-00347r_0009.jpg

相似文献

1
Development and Validation of a Computational Model for Androgen Receptor Activity.雄激素受体活性计算模型的开发与验证
Chem Res Toxicol. 2017 Apr 17;30(4):946-964. doi: 10.1021/acs.chemrestox.6b00347. Epub 2016 Dec 9.
2
Selecting a minimal set of androgen receptor assays for screening chemicals.选择一组最小的雄激素受体检测方法用于筛选化学物质。
Regul Toxicol Pharmacol. 2020 Nov;117:104764. doi: 10.1016/j.yrtph.2020.104764. Epub 2020 Aug 14.
3
Evaluation of androgen assay results using a curated Hershberger database.利用经编订的 Hershberger 数据库评估雄激素检测结果。
Reprod Toxicol. 2018 Oct;81:272-280. doi: 10.1016/j.reprotox.2018.08.017. Epub 2018 Sep 8.
4
Development, validation and integration of in silico models to identify androgen active chemicals.开发、验证和整合计算模型以识别雄激素活性化学物质。
Chemosphere. 2019 Apr;220:204-215. doi: 10.1016/j.chemosphere.2018.12.131. Epub 2018 Dec 19.
5
CoMPARA: Collaborative Modeling Project for Androgen Receptor Activity.CoMPARA:雄激素受体活性协作建模项目。
Environ Health Perspect. 2020 Feb;128(2):27002. doi: 10.1289/EHP5580. Epub 2020 Feb 7.
6
Determining direct binders of the Androgen Receptor using a high-throughput Cellular Thermal Shift Assay.使用高通量细胞热转移分析测定雄激素受体的直接结合物。
Sci Rep. 2018 Jan 9;8(1):163. doi: 10.1038/s41598-017-18650-x.
7
Identification of Androgen Receptor Modulators in a Prostate Cancer Cell Line Microarray Compendium.在前列腺癌细胞系微阵列汇编中鉴定雄激素受体调节剂。
Toxicol Sci. 2018 Nov 1;166(1):146-162. doi: 10.1093/toxsci/kfy187.
8
Machine Learning Consensus To Predict the Binding to the Androgen Receptor within the CoMPARA Project.机器学习共识预测雄激素受体结合在 CoMPARA 项目中。
J Chem Inf Model. 2019 May 28;59(5):1839-1848. doi: 10.1021/acs.jcim.8b00794. Epub 2019 Feb 11.
9
Characterisation and validation of an in vitro transactivation assay based on the 22Rv1/MMTV_GR-KO cell line to detect human androgen receptor agonists and antagonists.基于 22Rv1/MMTV_GR-KO 细胞系的体外转录激活检测法的鉴定与验证,用于检测人类雄激素受体激动剂和拮抗剂。
Food Chem Toxicol. 2021 Jun;152:112206. doi: 10.1016/j.fct.2021.112206. Epub 2021 Apr 19.
10
Endocrine Disruption at the Androgen Receptor: Employing Molecular Dynamics and Docking for Improved Virtual Screening and Toxicity Prediction.雄激素受体的内分泌干扰:运用分子动力学和对接提高虚拟筛选和毒性预测的能力。
Int J Mol Sci. 2018 Jun 15;19(6):1784. doi: 10.3390/ijms19061784.

引用本文的文献

1
An advancement in developmental and reproductive toxicity (DART) risk assessment: evaluation of a bioactivity and exposure-based NAM toolbox.发育和生殖毒性(DART)风险评估的进展:基于生物活性和暴露的NAM工具箱评估
Front Toxicol. 2025 Jun 30;7:1602065. doi: 10.3389/ftox.2025.1602065. eCollection 2025.
2
Hypothesis-driven weight of evidence evaluation indicates ethylbenzene lacks endocrine disruption potential by EATS pathways.基于假设的证据权重评估表明,乙苯通过EATS途径缺乏内分泌干扰潜力。
EXCLI J. 2025 Mar 27;24:479-507. doi: 10.17179/excli2024-7822. eCollection 2025.
3
Evaluation of the endocrine disrupting potential of Di-isononyl phthalate.

本文引用的文献

1
Identifying environmental chemicals as agonists of the androgen receptor by using a quantitative high-throughput screening platform.通过使用定量高通量筛选平台鉴定环境化学物质作为雄激素受体的激动剂。
Toxicology. 2017 Jun 15;385:48-58. doi: 10.1016/j.tox.2017.05.001. Epub 2017 May 4.
2
ToxCast Chemical Landscape: Paving the Road to 21st Century Toxicology.ToxCast化学图谱:为21世纪毒理学铺平道路。
Chem Res Toxicol. 2016 Aug 15;29(8):1225-51. doi: 10.1021/acs.chemrestox.6b00135. Epub 2016 Jul 20.
3
A predictive data-driven framework for endocrine prioritization: a triazole fungicide case study.
邻苯二甲酸二异壬酯的内分泌干扰潜力评估。
Curr Res Toxicol. 2025 Feb 1;8:100220. doi: 10.1016/j.crtox.2025.100220. eCollection 2025.
4
Screening for Endocrine Bioactivity Potential of Tobacco Product Chemicals Including Flavor Chemicals.烟草制品化学物质(包括香料化学物质)内分泌生物活性潜力的筛查
Environ Toxicol. 2025 Jun;40(6):935-945. doi: 10.1002/tox.24472. Epub 2025 Jan 30.
5
Combining graph neural networks and transformers for few-shot nuclear receptor binding activity prediction.结合图神经网络和变换器进行少样本核受体结合活性预测。
J Cheminform. 2024 Sep 27;16(1):109. doi: 10.1186/s13321-024-00902-4.
6
Community-Engaged Research and the Use of Open Access ToxVal/ToxRef In Vivo Databases and New Approach Methodologies (NAM) to Address Human Health Risks From Environmental Contaminants.社区参与式研究以及利用开放获取的 ToxVal/ToxRef 体内数据库和新方法学(NAM)来应对环境污染物对人类健康的风险。
Birth Defects Res. 2024 Sep;116(9):e2395. doi: 10.1002/bdr2.2395.
7
Personal air sampling for pesticides in the California San Joaquin Valley.加利福尼亚圣华金谷地区农药的个人空气采样
J Expo Sci Environ Epidemiol. 2025 May;35(3):486-492. doi: 10.1038/s41370-024-00708-4. Epub 2024 Sep 10.
8
Reflected generalized concentration addition and Bayesian hierarchical models to improve chemical mixture prediction.运用反射广义浓度相加模型和贝叶斯分层模型改进化学混合物预测。
PLoS One. 2024 Mar 28;19(3):e0298687. doi: 10.1371/journal.pone.0298687. eCollection 2024.
9
Optimizing androgen receptor prioritization using high-throughput assay-based activity models.使用基于高通量检测的活性模型优化雄激素受体优先级排序。
Front Toxicol. 2024 Mar 11;6:1347364. doi: 10.3389/ftox.2024.1347364. eCollection 2024.
10
Investigating open access new approach methods (NAM) to assess biological points of departure: A case study with 4 neurotoxic pesticides.研究用于评估生物学起始点的开放获取新方法(NAM):以4种神经毒性杀虫剂为例的案例研究
Curr Res Toxicol. 2024 Feb 15;6:100156. doi: 10.1016/j.crtox.2024.100156. eCollection 2024.
一种用于内分泌优先排序的预测性数据驱动框架:以三唑类杀菌剂为例的研究
Crit Rev Toxicol. 2016 Oct;46(9):785-833. doi: 10.1080/10408444.2016.1193722. Epub 2016 Jun 27.
4
Editor's Highlight: Analysis of the Effects of Cell Stress and Cytotoxicity on In Vitro Assay Activity Across a Diverse Chemical and Assay Space.编辑推荐:在不同化学物质和检测体系中分析细胞应激和细胞毒性对体外检测活性的影响
Toxicol Sci. 2016 Aug;152(2):323-39. doi: 10.1093/toxsci/kfw092. Epub 2016 May 20.
5
Integration of Life-Stage Physiologically Based Pharmacokinetic Models with Adverse Outcome Pathways and Environmental Exposure Models to Screen for Environmental Hazards.将基于生理的生命阶段药代动力学模型与不良结局途径及环境暴露模型相结合以筛选环境危害
Toxicol Sci. 2016 Jul;152(1):230-43. doi: 10.1093/toxsci/kfw082. Epub 2016 May 4.
6
Completing the Link between Exposure Science and Toxicology for Improved Environmental Health Decision Making: The Aggregate Exposure Pathway Framework.完善暴露科学与毒理学之间的联系以改善环境健康决策:综合暴露途径框架。
Environ Sci Technol. 2016 May 3;50(9):4579-86. doi: 10.1021/acs.est.5b05311. Epub 2016 Feb 10.
7
Integrated Model of Chemical Perturbations of a Biological Pathway Using 18 In Vitro High-Throughput Screening Assays for the Estrogen Receptor.使用18种雌激素受体体外高通量筛选检测方法对生物途径化学扰动进行的综合模型
Toxicol Sci. 2015 Nov;148(1):137-54. doi: 10.1093/toxsci/kfv168. Epub 2015 Aug 13.
8
Incorporating High-Throughput Exposure Predictions With Dosimetry-Adjusted In Vitro Bioactivity to Inform Chemical Toxicity Testing.将高通量暴露预测与剂量测定调整后的体外生物活性相结合,为化学毒性测试提供信息。
Toxicol Sci. 2015 Nov;148(1):121-36. doi: 10.1093/toxsci/kfv171. Epub 2015 Aug 6.
9
Toxicokinetic Triage for Environmental Chemicals.环境化学品的毒代动力学分类
Toxicol Sci. 2015 Sep;147(1):55-67. doi: 10.1093/toxsci/kfv118. Epub 2015 Jun 16.
10
Screening Chemicals for Estrogen Receptor Bioactivity Using a Computational Model.利用计算模型筛选具有雌激素受体生物活性的化学物质。
Environ Sci Technol. 2015 Jul 21;49(14):8804-14. doi: 10.1021/acs.est.5b02641. Epub 2015 Jun 26.