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基于叶绿体rbcL、trnH-psbA和核Acc1基因序列推断澳洲黄花茅(小麦族;禾本科)的基因组起源、历史杂交及遗传分化

Genome origin, historical hybridization and genetic differentiation in Anthosachne australasica (Triticeae; Poaceae), inferred from chloroplast rbcL, trnH-psbA and nuclear Acc1 gene sequences.

作者信息

Sha Li-Na, Fan Xing, Wang Xiao-Li, Dong Zhen-Zhen, Zeng Jian, Zhang Hai-Qin, Kang Hou-Yang, Wang Yi, Liao Jin-Qiu, Zhou Yong-Hong

机构信息

Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China.

Key Laboratory of Crop Genetic Resources and Improvement, Ministry of Education, Sichuan Agricultural University, Yaan 625014, Sichuan, China.

出版信息

Ann Bot. 2017 Jan;119(1):95-107. doi: 10.1093/aob/mcw222. Epub 2016 Dec 30.

Abstract

BACKGROUND AND AIMS

Anthosachne Steudel is a group of allopolyploid species that was derived from hexaploidization between the Asian StY genome Roegneria entity and the Australasia W genome Australopyrum species. Polyploidization and apomixis contribute to taxonomic complexity in Anthosachne Here, a study is presented on the phylogeny and evolutionary history of Anthosachne australasica The aims are to demonstrate the process of polyploidization events and to explore the differentiation patterns of the St genome following geographic isolation.

METHODS

Chloroplast rbcL and trnH-psbA and nuclear Acc1 gene sequences of 60 Anthosachne taxa and nine Roegneria species were analysed with those of 33 diploid taxa representing 20 basic genomes in Triticeae. The phylogenetic relationships were reconstructed. A time-calibrated phylogeny was generated to estimate the evolutionary history of A. australasica Nucleotide diversity patterns were used to assess the divergence within A. australasica and between Anthosachne and its putative progenitors.

KEY RESULTS

Three homoeologous copies of the Acc1 sequences from Anthosachne were grouped with the Acc1 sequences from Roegneria, Pseudoroegneria, Australopyrum, Dasypyrum and Peridictyon The chloroplast sequences of Anthosachne were clustered with those from Roegneria and Pseudoroegneria Divergence time for Anthosachne was dated to 4·66 million years ago (MYA). The level of nucleotide diversity in Australasian Anthosachne was higher than that in continental Roegneria A low level of genetic differentiation within the A. australasica complex was found.

CONCLUSIONS

Anthosachne originated from historical hybridization between Australopyrum species and a Roegneria entity colonized from Asia to Australasia via South-east Asia during the late Miocene. The St lineage served as the maternal donor during the speciation of Anthosachne A contrasting pattern of population genetic structure exists in the A. australasica complex. Greater diversity in island Anthosachne compared with continental Roegneria might be associated with mutation, polyploidization, apomixis and expansion. It is reasonable to consider that A. australasica var. scabra and A. australasica var. plurinervisa should be included in the A. australasica complex.

摘要

背景与目的

Anthosachne Steudel是一组异源多倍体物种,由亚洲StY基因组鹅观草属实体与澳大拉西亚W基因组澳小麦属物种之间的六倍体化产生。多倍体化和无融合生殖导致了Anthosachne的分类复杂性。本文对澳大拉西亚Anthosachne的系统发育和进化历史进行了研究。目的是展示多倍体化事件的过程,并探索地理隔离后St基因组的分化模式。

方法

分析了60个Anthosachne分类群和9个鹅观草属物种的叶绿体rbcL和trnH-psbA以及核Acc1基因序列,并与代表小麦族20个基本基因组的33个二倍体分类群的序列进行了比较。重建了系统发育关系。构建了一个时间校准的系统发育树,以估计澳大拉西亚Anthosachne的进化历史。利用核苷酸多样性模式评估澳大拉西亚Anthosachne内部以及Anthosachne与其假定祖先之间的差异。

关键结果

Anthosachne的Acc1序列的三个同源拷贝与鹅观草属、拟鹅观草属、澳小麦属、芒颖草属和绢毛麦属的Acc1序列归为一组。Anthosachne的叶绿体序列与鹅观草属和拟鹅观草属的序列聚类在一起。Anthosachne的分化时间可追溯到466万年前。澳大拉西亚Anthosachne的核苷酸多样性水平高于大陆鹅观草属。在澳大拉西亚Anthosachne复合体中发现了低水平的遗传分化。

结论

Anthosachne起源于中新世晚期澳小麦属物种与一个通过东南亚从亚洲殖民到澳大拉西亚的鹅观草属实体之间的历史杂交。在Anthosachne的物种形成过程中,St谱系作为母本供体。澳大拉西亚Anthosachne复合体存在种群遗传结构的对比模式。与大陆鹅观草属相比,岛屿Anthosachne中更大的多样性可能与突变、多倍体化、无融合生殖和扩张有关。有理由认为糙茎澳大拉西亚Anthosachne和多脉澳大拉西亚Anthosachne应归入澳大拉西亚Anthosachne复合体。

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