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Composition and Structure of the Inorganic Core of Relaxed Intermediate X(Y122F) of Escherichia coli Ribonucleotide Reductase.大肠杆菌核糖核苷酸还原酶松弛中间体X(Y122F)无机核心的组成与结构
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How Accurately Can Extended X-ray Absorption Spectra Be Predicted from First Principles? Implications for Modeling the Oxygen-Evolving Complex in Photosystem II.从第一性原理出发,扩展 X 射线吸收谱能被多精确地预测?对模拟光合作用 II 中放氧复合物的启示。
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10
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沙眼衣原体核糖核苷酸还原酶中 Mn(IV)/Fe(IV) 激活中间产物中二聚 μ-氧代二核结构的证据。

Evidence for a Di-μ-oxo Diamond Core in the Mn(IV)/Fe(IV) Activation Intermediate of Ribonucleotide Reductase from Chlamydia trachomatis.

机构信息

Department of Chemistry and ‡Department of Biochemistry and Molecular Biology, The Pennsylvania State University , University Park, Pennsylvania 16802, United States.

出版信息

J Am Chem Soc. 2017 Feb 8;139(5):1950-1957. doi: 10.1021/jacs.6b11563. Epub 2017 Jan 27.

DOI:10.1021/jacs.6b11563
PMID:28075562
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5518598/
Abstract

High-valent iron and manganese complexes effect some of the most challenging biochemical reactions known, including hydrocarbon and water oxidations associated with the global carbon cycle and oxygenic photosynthesis, respectively. Their extreme reactivity presents an impediment to structural characterization, but their biological importance and potential chemical utility have, nevertheless, motivated extensive efforts toward that end. Several such intermediates accumulate during activation of class I ribonucleotide reductase (RNR) β subunits, which self-assemble dimetal cofactors with stable one-electron oxidants that serve to initiate the enzyme's free-radical mechanism. In the class I-c β subunit from Chlamydia trachomatis, a heterodinuclear Mn(II)/Fe(II) complex reacts with dioxygen to form a Mn(IV)/Fe(IV) intermediate, which undergoes reduction of the iron site to produce the active Mn(IV)/Fe(III) cofactor. Herein, we assess the structure of the Mn(IV)/Fe(IV) activation intermediate using Fe- and Mn-edge extended X-ray absorption fine structure (EXAFS) analysis and multifrequency pulse electron paramagnetic resonance (EPR) spectroscopy. The EXAFS results reveal a metal-metal vector of 2.74-2.75 Å and an intense light-atom (C/N/O) scattering interaction 1.8 Å from the Fe. Pulse EPR data reveal an exchangeable deuterium hyperfine coupling of strength |T| = 0.7 MHz, but no stronger couplings. The results suggest that the intermediate possesses a di-μ-oxo diamond core structure with a terminal hydroxide ligand to the Mn(IV).

摘要

高价铁和锰配合物催化着一些已知的最具挑战性的生化反应,包括与全球碳循环和光合作用分别相关的烃类和水的氧化。它们极高的反应活性对结构表征构成了障碍,但它们的生物学重要性和潜在的化学实用性,促使人们为此付出了大量努力。在 I 类核糖核苷酸还原酶 (RNR)β亚基的激活过程中,会积累一些这样的中间产物,β亚基自身组装具有稳定单电子氧化剂的双金属辅因子,用于启动酶的自由基机制。在沙眼衣原体的 I 类-cβ亚基中,一个异双核 Mn(II)/Fe(II)配合物与氧气反应形成 Mn(IV)/Fe(IV)中间产物,该中间产物经历铁位点的还原,生成活性的 Mn(IV)/Fe(III)辅因子。在此,我们使用 Fe 和 Mn 边扩展 X 射线吸收精细结构 (EXAFS)分析和多频脉冲电子顺磁共振 (EPR)光谱来评估 Mn(IV)/Fe(IV)激活中间产物的结构。EXAFS 结果显示金属-金属矢量为 2.74-2.75 Å,Fe 附近有强烈的轻原子 (C/N/O)散射相互作用 1.8 Å。脉冲 EPR 数据显示出可交换的氘超精细耦合强度 |T|=0.7 MHz,但没有更强的耦合。结果表明,该中间产物具有一个末端为羟基配体的二μ-氧代金刚石核结构。